Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.1e-177 625.2 349 100.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.2e-159 565.8 337 88.7
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.3e-137 491.5 360 72.2
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.6e-131 472.6 301 78.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.8e-130 469.2 278 81.7
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 6.3e-130 468.0 287 79.4
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.1e-129 467.2 279 81.4
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.4e-129 466.8 290 80.0
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.8e-129 466.5 279 82.1
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.4e-129 466.1 279 81.4
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.0e-128 463.0 280 79.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.3e-127 460.3 287 80.1
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.2e-127 459.5 294 78.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.2e-127 459.5 278 80.6
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 3.8e-127 458.8 279 79.2
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 6.5e-127 458.0 289 79.9
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.1e-126 457.2 296 77.4
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.1e-126 457.2 279 78.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.5e-126 456.8 278 81.7
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.9e-126 456.4 279 77.8
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 4.2e-126 455.3 367 65.1
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 9.5e-126 454.1 286 76.6
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.1e-125 453.0 285 78.2
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.7e-125 451.8 293 76.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 4.7e-125 451.8 356 66.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 6.1e-125 451.4 361 74.0
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 8.0e-125 451.1 279 78.1
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.0e-124 450.7 291 77.3
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 1.8e-124 449.9 296 74.7
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.3e-124 449.5 293 76.5
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.0e-124 449.1 293 77.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.0e-124 448.7 293 75.8
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-124 448.7 293 75.8
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.0e-124 448.7 287 74.9
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 5.2e-124 448.4 278 78.8
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 8.8e-124 447.6 293 75.4
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 8.8e-124 447.6 293 75.4
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 8.8e-124 447.6 293 75.4
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.0e-123 446.4 293 75.8
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.4e-123 445.7 288 76.4
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 5.7e-123 444.9 287 74.2
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 5.7e-123 444.9 280 78.2
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 7.5e-123 444.5 287 74.2
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-122 443.4 293 75.1
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.7e-122 443.4 284 76.8
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.8e-122 442.6 281 76.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 3.7e-122 442.2 292 76.4
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 4.9e-122 441.8 284 76.1
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 8.3e-122 441.0 282 76.2
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 8.3e-122 441.0 273 76.6
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.4e-121 440.3 288 72.9
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.4e-121 439.5 290 75.9
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-120 436.8 284 75.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.0e-120 436.4 296 74.3
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.5e-120 435.3 298 72.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.9e-120 434.9 281 76.2
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.3e-119 433.0 297 72.1
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.8e-119 432.2 278 75.5
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.5e-118 430.3 255 80.0
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 9.5e-118 427.6 297 71.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.2e-117 427.2 263 78.7
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 2.3e-116 422.9 288 74.3
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.9e-116 421.0 266 78.6
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.5e-115 420.2 288 71.2
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 3.4e-115 419.1 288 71.2
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.2e-114 416.4 277 74.0
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 4.9e-114 415.2 304 68.4
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 1.1e-113 414.1 279 73.1
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.4e-113 413.7 281 73.3
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 1.4e-113 413.7 287 71.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.4e-113 413.7 282 71.6
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.2e-113 412.5 279 73.1
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.0e-112 409.8 292 71.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.3e-111 406.4 285 71.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.3e-110 401.4 276 68.8
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.6e-109 399.1 281 71.9
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 4.4e-107 392.1 275 69.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.0e-103 380.9 264 71.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.7e-103 380.2 298 64.8
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 5.0e-103 378.6 265 69.4
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.9e-102 376.7 260 71.5
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 2.5e-102 376.3 280 67.5
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.8e-99 365.2 256 66.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 6.4e-98 361.7 288 62.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 6.4e-98 361.7 297 66.3
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.1e-97 359.0 261 69.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 5.4e-97 358.6 256 66.8
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.2e-96 357.5 291 60.8
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.6e-95 351.7 247 70.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.6e-95 351.3 248 69.4
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.8e-93 346.3 241 70.1
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.7e-93 345.5 251 68.5
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.8e-92 343.6 242 69.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.0e-92 342.4 258 66.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 3.4e-91 339.3 259 63.7
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 7.6e-91 338.2 265 60.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.9e-90 336.3 265 59.6
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.8e-90 335.9 261 60.9
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.9e-90 335.5 266 59.4
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-89 334.3 254 64.2
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-89 332.8 257 61.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-89 332.8 257 61.5
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.1e-89 332.4 254 63.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.7e-88 329.7 265 58.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.0e-87 327.8 255 60.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.0e-87 327.8 259 61.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.0e-87 326.2 257 62.3
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 5.1e-87 325.5 264 59.5
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.2e-85 320.9 258 58.5
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.6e-85 319.3 260 58.5
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 8.1e-85 318.2 265 57.4
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-85 318.2 264 58.7
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.4e-84 316.6 265 57.0
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-84 316.2 266 56.8
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.5e-83 313.9 231 66.7
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-83 313.5 257 58.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-83 313.5 257 58.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 9.9e-83 311.2 259 57.5
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-82 310.8 256 57.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-82 310.8 256 57.8
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.2e-81 306.2 265 57.0
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 3.5e-80 302.8 231 61.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.5e-80 302.8 197 74.6
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.3e-77 294.3 178 79.8
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.0e-76 289.3 229 59.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 9.9e-75 284.6 253 59.3
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.4e-74 282.0 251 56.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.2e-73 279.6 251 55.4
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-72 277.3 258 52.7
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.6e-70 268.9 237 57.8
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.3e-69 267.7 168 76.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-66 257.7 228 53.5
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-66 257.3 258 52.3
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-66 256.9 258 52.3
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.7e-64 250.0 168 72.0
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.0e-63 248.1 190 64.2
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.3e-62 243.0 247 51.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 5.6e-62 242.3 401 39.9
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 6.9e-60 235.3 279 48.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.8e-58 229.6 224 53.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.2e-56 224.6 179 59.8
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.5e-54 216.9 137 75.2
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.3e-53 214.5 170 57.1
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 9.0e-52 208.4 135 74.1
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.0e-51 207.2 151 62.3
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.7e-50 204.1 166 57.8
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 5.0e-50 202.6 250 44.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 9.1e-44 181.8 224 47.8
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.1e-39 166.0 199 48.7
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.6e-38 163.7 237 40.5
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.1e-36 158.3 130 59.2
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.0e-34 151.8 185 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.9e-31 139.8 215 40.9
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 4.8e-29 132.9 243 37.0
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.0e-27 127.5 70 88.6
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-25 119.8 122 54.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 6.1e-24 115.9 87 62.1
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-23 114.8 110 51.8
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.0e-22 110.9 91 64.8
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.4e-20 104.8 181 35.9
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.0e-18 98.6 208 31.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-17 93.6 65 73.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.8e-15 87.8 65 69.2
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-14 85.1 68 66.2
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.6e-14 84.0 70 61.4
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.8e-12 77.8 43 83.7
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.4e-12 77.4 64 59.4
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.7e-11 73.9 66 53.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.0e-10 72.0 82 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.3e-10 71.6 277 27.1
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.3e-10 71.6 64 57.8
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 5.0e-10 69.7 58 62.1


User provided reference genes

Program Settings