Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.5e-165 586.3 318 100.0
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.5e-154 549.7 313 95.8
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 5.4e-152 541.2 315 94.0
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 4.7e-116 421.8 321 74.1
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 3.0e-110 402.5 249 90.0
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 3.3e-101 372.5 319 66.5
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 9.6e-101 370.9 312 65.1
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 5.8e-98 361.7 320 66.2
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 4.9e-97 358.6 318 62.6
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 8.4e-97 357.8 318 67.3
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 5.4e-96 355.1 318 64.2
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 3.9e-94 349.0 288 71.9
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 5.1e-94 348.6 328 62.5
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 1.5e-93 347.1 317 63.4
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 4.3e-93 345.5 318 64.8
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 9.6e-93 344.4 281 65.8
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 6.2e-92 341.7 327 59.6
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.4e-91 340.5 242 76.4
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 1.8e-91 340.1 323 60.4
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 1.5e-90 337.0 319 61.1
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.6e-90 336.3 319 61.1
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 3.4e-90 335.9 326 61.7
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 4.5e-90 335.5 323 59.8
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 4.5e-90 335.5 320 61.2
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 4.5e-90 335.5 295 63.7
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 2.2e-89 333.2 359 56.8
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.9e-89 332.8 317 62.8
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 3.8e-89 332.4 317 63.1
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 6.4e-89 331.6 316 60.8
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 1.1e-88 330.9 257 68.9
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 2.4e-88 329.7 271 64.9
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 4.2e-88 328.9 320 61.6
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 7.1e-88 328.2 316 60.1
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 1.2e-87 327.4 317 62.1
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.6e-87 327.0 317 62.1
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 4.6e-87 325.5 322 58.7
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 1.8e-86 323.6 321 61.1
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 6.7e-86 321.6 317 58.7
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 6.7e-86 321.6 249 68.7
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 1.1e-85 320.9 323 59.8
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 1.5e-85 320.5 320 58.8
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 2.8e-84 316.2 253 70.0
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 3.7e-84 315.8 307 57.3
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 1.1e-83 314.3 320 56.6
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 5.3e-83 312.0 326 57.1
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 6.9e-83 311.6 260 63.5
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 2.0e-82 310.1 253 66.0
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 2.6e-82 309.7 248 66.5
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 1.0e-81 307.8 264 64.0
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 1.7e-81 307.0 262 62.6
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 2.2e-81 306.6 249 66.3
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 2.9e-81 306.2 311 58.8
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 8.4e-81 304.7 310 57.7
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 8.4e-81 304.7 305 55.1
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 1.1e-80 304.3 318 57.9
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 3.2e-80 302.8 270 60.0
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 4.2e-80 302.4 304 57.6
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 3.9e-78 295.8 268 61.2
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 1.1e-77 294.3 283 60.1
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 9.7e-77 291.2 261 62.1
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 9.7e-77 291.2 326 54.3
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 1.6e-76 290.4 307 55.0
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.2e-76 290.0 319 54.2
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 1.4e-75 287.3 267 59.6
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.8e-75 287.0 313 54.3
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 2.4e-75 286.6 303 56.1
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 6.9e-75 285.0 306 54.6
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 9.0e-75 284.6 256 60.2
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 9.0e-75 284.6 256 60.2
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 9.0e-75 284.6 256 60.2
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.2e-74 284.3 256 60.2
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.6e-74 283.1 302 53.6
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 2.6e-74 283.1 286 57.3
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 5.9e-74 282.0 324 50.0
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 5.9e-74 282.0 283 57.2
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 7.7e-74 281.6 295 55.6
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 7.7e-74 281.6 307 53.4
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.3e-73 280.8 308 53.9
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.3e-73 280.8 257 59.9
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.9e-72 276.9 303 54.8
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 3.2e-72 276.2 307 51.8
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 9.4e-72 274.6 277 55.6
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 1.4e-70 270.8 324 50.0
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.8e-70 270.4 256 57.4
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 1.8e-70 270.4 257 57.6
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.3e-69 266.2 323 46.7
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 7.4e-69 265.0 284 54.6
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 1.1e-67 261.2 278 50.4
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 9.1e-67 258.1 276 55.4
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 1.2e-66 257.7 320 50.9
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.9e-65 253.1 318 50.9
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 2.9e-65 253.1 318 50.9
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 3.8e-65 252.7 246 55.7
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 7.9e-63 245.0 239 59.8
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 3.5e-58 229.6 315 47.9
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 8.8e-54 214.9 302 45.0
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.4e-53 212.6 319 41.1
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 2.0e-50 203.8 263 49.0
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 4.5e-50 202.6 265 48.7
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 3.2e-48 196.4 185 55.7
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 3.0e-46 189.9 185 54.1
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 2.4e-43 180.3 171 63.7
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 7.0e-43 178.7 228 48.2
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 7.7e-42 175.3 248 43.5
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 3.6e-39 166.4 242 42.6
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 5.7e-37 159.1 158 58.2
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 1.4e-35 154.5 115 68.7
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 9.1e-35 151.8 136 61.8
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 5.9e-34 149.1 291 39.2
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 1.4e-30 137.9 268 35.4
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 1.8e-30 137.5 232 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 2.3e-22 110.5 297 31.0
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 6.4e-20 102.4 235 31.5
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.9e-19 100.9 145 37.9
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 7.0e-19 99.0 79 67.1
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 1.6e-18 97.8 301 28.2
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 2.3e-17 94.0 259 31.7
QL09p045125 Quercus lobata HOM05D042224 ORTHO05D008439 6.6e-17 92.4 172 39.0
QL11p014218 Quercus lobata HOM05D042224 ORTHO05D008439 8.6e-17 92.0 165 39.4
QL05p088647 Quercus lobata HOM05D042224 ORTHO05D008439 1.9e-11 74.3 156 35.3
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 1.6e-10 71.2 255 29.4
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 7.8e-10 68.9 86 50.0
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.0e-09 67.0 58 51.7


User provided reference genes

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