Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 6.2e-180 634.0 323 100.0
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 1.2e-127 460.3 253 92.5
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 1.1e-109 400.6 253 83.0
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 2.5e-104 382.9 253 81.8
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.2e-97 359.8 256 74.2
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 8.6e-81 304.7 208 73.1
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 3.3e-80 302.8 247 66.4
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 7.3e-80 301.6 247 66.0
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.4e-78 297.4 234 67.5
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.2e-77 294.3 235 66.0
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 2.6e-77 293.1 247 63.2
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 6.4e-76 288.5 236 63.6
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 1.8e-75 287.0 258 60.5
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 1.3e-73 280.8 221 63.8
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 2.3e-73 280.0 225 64.4
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 5.0e-73 278.9 258 60.5
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 1.5e-72 277.3 255 60.8
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.9e-72 276.9 239 60.3
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 2.5e-72 276.6 239 62.3
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 2.1e-71 273.5 232 61.2
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.6e-71 272.7 233 63.1
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 3.6e-71 272.7 251 59.0
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 4.7e-71 272.3 236 60.6
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 8.0e-71 271.6 213 66.2
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 4.0e-70 269.2 210 65.7
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.0e-70 269.2 231 62.3
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 8.9e-70 268.1 256 57.4
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 5.8e-69 265.4 205 63.9
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 7.5e-69 265.0 244 57.4
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 6.4e-68 261.9 251 58.2
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 8.3e-68 261.5 257 57.6
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 1.9e-67 260.4 236 61.0
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 5.4e-67 258.8 198 65.7
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 5.4e-67 258.8 253 55.7
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 1.6e-66 257.3 228 59.6
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 1.6e-66 257.3 208 62.0
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 3.0e-65 253.1 250 56.0
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 1.5e-64 250.8 254 56.3
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 1.9e-64 250.4 249 57.0
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 4.3e-64 249.2 294 50.0
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 6.2e-63 245.4 207 59.4
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 6.2e-63 245.4 258 53.5
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 8.1e-63 245.0 274 52.9
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-62 244.6 249 56.6
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 1.1e-62 244.6 251 57.0
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 1.8e-62 243.8 222 59.5
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 6.8e-62 241.9 198 62.1
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 4.4e-61 239.2 252 54.4
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 4.4e-61 239.2 241 55.6
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 4.4e-61 239.2 223 58.3
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 3.7e-60 236.1 195 64.6
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 3.7e-60 236.1 225 56.0
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 4.9e-60 235.7 230 55.7
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 1.9e-59 233.8 233 56.2
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 2.4e-59 233.4 254 52.8
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.2e-59 233.0 226 55.8
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 4.1e-59 232.6 227 54.2
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 5.4e-59 232.3 255 52.5
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 3.5e-58 229.6 198 57.6
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 6.0e-58 228.8 256 52.0
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 3.9e-57 226.1 205 57.1
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 3.3e-56 223.0 237 54.0
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 2.1e-55 220.3 290 45.9
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 3.1e-54 216.5 179 62.0
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 4.0e-54 216.1 209 57.4
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 5.2e-54 215.7 251 51.8
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 5.2e-54 215.7 232 53.0
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 6.8e-54 215.3 244 50.8
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 1.5e-53 214.2 233 52.8
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 3.4e-53 213.0 220 54.1
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 5.8e-53 212.2 255 49.8
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 7.6e-53 211.8 219 50.7
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.3e-52 211.1 249 50.6
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.1e-51 208.0 229 53.3
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 7.1e-51 205.3 256 49.2
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.6e-50 204.1 219 54.3
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 3.5e-50 203.0 229 52.8
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 7.8e-50 201.8 252 50.8
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 1.3e-49 201.1 229 48.9
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.7e-49 200.7 216 51.9
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.9e-49 199.5 225 51.1
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 8.7e-49 198.4 164 61.0
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 1.1e-48 198.0 212 51.9
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.2e-47 194.5 231 45.9
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 1.6e-47 194.1 215 50.2
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 6.2e-47 192.2 206 53.4
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 2.4e-46 190.3 184 54.9
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 1.5e-45 187.6 182 54.4
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 2.0e-45 187.2 172 57.6
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 2.6e-45 186.8 185 55.1
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 7.6e-45 185.3 156 60.9
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 1.7e-44 184.1 194 51.5
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 3.8e-44 183.0 206 51.0
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 3.8e-44 183.0 181 53.6
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 4.9e-44 182.6 160 58.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 4.9e-44 182.6 159 57.9
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 4.9e-44 182.6 211 49.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 8.4e-44 181.8 159 57.9
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.9e-43 180.6 161 59.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.9e-43 180.6 159 56.6
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 1.9e-43 180.6 159 56.6
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 2.4e-43 180.3 210 50.0
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.4e-43 180.3 159 57.2
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 2.7e-42 176.8 230 45.2
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 3.5e-42 176.4 162 58.6
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.3e-41 174.5 242 45.0
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 3.0e-41 173.3 220 45.0
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.5e-37 161.0 235 46.4
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 1.7e-36 157.5 154 56.5
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 4.2e-35 152.9 138 54.3
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 2.7e-34 150.2 131 55.0
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 4.6e-34 149.4 166 51.8
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 3.3e-32 143.3 132 53.0
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.3e-32 142.9 156 51.9
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 4.8e-31 139.4 122 51.6
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 6.2e-31 139.0 161 50.3
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 9.0e-30 135.2 104 60.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 4.5e-29 132.9 86 72.1
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 2.9e-28 130.2 247 40.1
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 1.6e-26 124.4 138 48.6
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.3e-25 121.3 98 58.2
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 8.7e-25 118.6 108 60.2
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-19 101.7 107 52.3
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 6.9e-06 55.8 60 51.7


User provided reference genes

Program Settings