Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011931 Carpinus fangiana HOM05D007894 ORTHO05D009691 3.5e-138 495.0 256 100.0
Haze_09166 Corylus avellana HOM05D007894 ORTHO05D009691 2.3e-129 465.7 257 93.0
CiPaw.11G113300 Carya illinoinensis HOM05D007894 ORTHO05D009691 2.3e-81 306.2 269 64.3
CiPaw.12G077900 Carya illinoinensis HOM05D007894 ORTHO05D009691 9.8e-80 300.8 279 63.4
MD14G1125500 Malus domestica HOM05D007894 ORTHO05D009691 4.9e-79 298.5 268 63.8
Prupe.5G129000 Prunus persica HOM05D007894 ORTHO05D009691 1.9e-78 296.6 258 62.4
MD06G1117900 Malus domestica HOM05D007894 ORTHO05D009691 2.4e-78 296.2 252 64.7
FvH4_5g10980 Fragaria vesca HOM05D007894 ORTHO05D009691 6.0e-77 291.6 265 62.3
FAN18G0782 Fragaria x ananassa HOM05D007894 ORTHO05D009691 6.0e-77 291.6 265 62.3
QL02p028226 Quercus lobata HOM05D007894 ORTHO05D009691 6.0e-77 291.6 272 59.9
RcHm_v2.0_Chr7g0186241 Rosa chinensis HOM05D007894 ORTHO05D009691 5.0e-76 288.5 259 61.8
RcHm_v2.0_Chr7g0186841 Rosa chinensis HOM05D007894 ORTHO05D009691 1.9e-75 286.6 259 61.8
FAN08G2177 Fragaria x ananassa HOM05D007894 ORTHO05D009691 7.3e-75 284.6 271 60.5
FAN13G0186 Fragaria x ananassa HOM05D007894 ORTHO05D009691 1.2e-74 283.9 265 61.1
FAN04G2047 Fragaria x ananassa HOM05D007894 ORTHO05D009691 4.7e-74 282.0 260 61.5
Thecc.03G221700 Theobroma cacao HOM05D007894 ORTHO05D009691 4.7e-74 282.0 262 59.5
COL.COLO4_10790 Corchorus olitorius HOM05D007894 ORTHO05D009691 4.0e-73 278.9 264 57.2
TAR629G0466 Trochodendron aralioides HOM05D007894 ORTHO05D009691 3.0e-68 262.7 269 57.6
CANSAT21G2064 Cannabis sativa HOM05D007894 ORTHO05D009691 2.5e-67 259.6 266 56.4
Atru.chr9.1896 Acer truncatum HOM05D007894 ORTHO05D009691 9.5e-67 257.7 269 54.3
Duzib084G0115 Durio zibethinus HOM05D007894 ORTHO05D009691 5.2e-65 251.9 262 54.2
TWI81G0638 Tripterygium wilfordii HOM05D007894 ORTHO05D009691 1.2e-64 250.8 262 54.2
Gohir.A12G239800 Gossypium hirsutum HOM05D007894 ORTHO05D009691 1.1e-62 244.2 262 51.1
Gorai.008G258200 Gossypium raimondii HOM05D007894 ORTHO05D009691 1.9e-62 243.4 262 51.1
Gohir.D12G241000 Gossypium hirsutum HOM05D007894 ORTHO05D009691 2.7e-61 239.6 261 50.6
Sed0027072 Sechium edule HOM05D007894 ORTHO05D009691 2.7e-61 239.6 253 53.4
Manes.02G003300 Manihot esculenta HOM05D007894 ORTHO05D009691 1.0e-60 237.7 270 53.7
Cpa.g.sc175.21 Carica papaya HOM05D007894 ORTHO05D009691 2.3e-60 236.5 254 52.8
PGR042G1438 Punica granatum HOM05D007894 ORTHO05D009691 1.5e-59 233.8 274 49.3
Sp7g22070 Schrenkiella parvula HOM05D007894 ORTHO05D009691 3.3e-59 232.6 261 55.6
BcaNung01115 Brassica carinata HOM05D007894 ORTHO05D009691 1.2e-58 230.7 258 54.3
Aa31LG6G7360 Aethionema arabicum HOM05D007894 ORTHO05D009691 1.4e-57 227.3 255 53.7
Lj8P201T33 Lonicera japonica HOM05D007894 ORTHO05D009691 6.8e-57 224.9 260 51.9
Gorai.004G129900 Gossypium raimondii HOM05D007894 ORTHO05D009691 2.0e-56 223.4 265 49.8
Gohir.D08G123100 Gossypium hirsutum HOM05D007894 ORTHO05D009691 2.6e-56 223.0 265 49.8
Ciclev10021739m.g Citrus clementina HOM05D007894 ORTHO05D009691 3.4e-56 222.6 268 49.3
Gohir.A08G110200 Gossypium hirsutum HOM05D007894 ORTHO05D009691 3.4e-56 222.6 265 50.2
MELO3C005782.2 Cucumis melo HOM05D007894 ORTHO05D009691 4.4e-56 222.2 262 51.5
ClCG01G001550 Citrullus lanatus HOM05D007894 ORTHO05D009691 9.9e-56 221.1 261 51.3
MBI12_g30970_MAGBIO Magnolia biondii HOM05D007894 ORTHO05D009691 1.3e-55 220.7 274 52.9
A01p15370 Brassica napus HOM05D007894 ORTHO05D009691 2.2e-55 219.9 253 53.4
Potri.001G082500 Populus trichocarpa HOM05D007894 ORTHO05D009691 1.9e-54 216.9 263 47.9
CsaV3_5G001720 Cucumis sativus L. HOM05D007894 ORTHO05D009691 1.6e-53 213.8 266 51.9
THA.LOC104815238 Tarenaya hassleriana HOM05D007894 ORTHO05D009691 3.5e-53 212.6 256 52.0
BcaC09g50910 Brassica carinata HOM05D007894 ORTHO05D009691 6.0e-53 211.8 256 52.0
Potri.003G147800 Populus trichocarpa HOM05D007894 ORTHO05D009691 7.8e-53 211.5 262 48.9
Lsat_1_v5_gn_3_14101 Lactuca sativa HOM05D007894 ORTHO05D009691 1.0e-52 211.1 259 50.2
C01p19320 Brassica napus HOM05D007894 ORTHO05D009691 1.1e-51 207.6 256 51.6
BolC1t01858H Brassica oleracea HOM05D007894 ORTHO05D009691 1.1e-51 207.6 256 51.6
Carub.0007s1699 Capsella rubella HOM05D007894 ORTHO05D009691 2.5e-51 206.5 261 51.0
Dinv12925 Davidia involucrata HOM05D007894 ORTHO05D009691 1.2e-50 204.1 257 51.4
Thhalv10026087m.g Eutrema salsugineum HOM05D007894 ORTHO05D009691 4.7e-50 202.2 257 51.0
CARHR231510 Cardamine hirsuta HOM05D007894 ORTHO05D009691 1.8e-49 200.3 259 49.0
Nn3g18883 Nelumbo nucifera HOM05D007894 ORTHO05D009691 2.4e-49 199.9 263 49.4
Aqoxy7G00025 Aquilegia oxysepala HOM05D007894 ORTHO05D009691 3.4e-48 196.1 264 48.5
Sc16g0010770 Simmondsia chinensis HOM05D007894 ORTHO05D009691 4.2e-46 189.1 274 47.4
PGSC0003DMG400012120 Solanum tuberosum HOM05D007894 ORTHO05D009691 1.0e-44 184.5 256 45.3
Nitab4.5_0007063g0010 Nicotiana tabacum HOM05D007894 ORTHO05D009691 1.3e-44 184.1 258 42.2
HanXRQChr03g0086121 Helianthus annuus HOM05D007894 ORTHO05D009691 1.7e-44 183.7 261 46.7
Nitab4.5_0004251g0020 Nicotiana tabacum HOM05D007894 ORTHO05D009691 1.7e-44 183.7 257 40.9
MSTRG.12199 Avicennia marina HOM05D007894 ORTHO05D009691 3.9e-44 182.6 253 45.8
Sabra03G0106300 Salix brachista HOM05D007894 ORTHO05D009691 3.9e-44 182.6 250 44.8
Oeu043316.1 Olea europaea HOM05D007894 ORTHO05D009691 1.9e-43 180.3 261 42.9
AL7G29180 Arabidopsis lyrata HOM05D007894 ORTHO05D009691 4.3e-43 179.1 259 47.5
Sopen08g031270 Solanum pennellii HOM05D007894 ORTHO05D009691 5.6e-43 178.7 250 45.6
ECA246G0434 Erigeron canadensis HOM05D007894 ORTHO05D009691 6.2e-42 175.3 275 45.1
AT4G24110 Arabidopsis thaliana HOM05D007894 ORTHO05D009691 1.4e-41 174.1 257 45.9
DCAR_006541 Daucus carota HOM05D007894 ORTHO05D009691 1.5e-40 170.6 268 44.4
PSO170G2911 Papaver somniferum HOM05D007894 ORTHO05D009691 4.6e-37 159.1 279 36.2
Sabra03G0107400 Salix brachista HOM05D001294 ORTHO05D009691 4.3e-35 152.5 239 42.3
Ah.03g148140 Amaranthus hybridus HOM05D007894 ORTHO05D009691 1.8e-33 147.1 271 36.5
Peaxi162Scf00074g00316 Petunia axillaris HOM05D007894 ORTHO05D009691 3.1e-33 146.4 260 37.7
CDE07G1250 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 3.8e-31 139.4 200 44.0
Solyc08g083050.1 Solanum lycopersicum HOM05D007894 ORTHO05D009691 1.2e-29 134.4 193 42.5
Migut.O00947 Erythranthe guttata HOM05D007894 ORTHO05D009691 6.0e-29 132.1 218 41.7
Actinidia22204 Actinidia chinensis HOM05D007894 ORTHO05D009691 2.4e-25 120.2 106 56.6
PSO017G1799 Papaver somniferum HOM05D007894 ORTHO05D009691 1.3e-23 114.4 179 39.7
Lj6g0022493 Lotus japonicus HOM05D007894 ORTHO05D009691 2.2e-23 113.6 278 32.4
Zm00001eb000900 Zea mays HOM05D019640 ORTHO05D009691 4.2e-22 109.4 252 35.7
FAN10G4307 Fragaria x ananassa HOM05D007894 ORTHO05D009691 3.0e-20 103.2 92 56.5
CDE04G0050 Ceratophyllum demersum HOM05D000458 ORTHO05D000951 1.5e-19 100.9 229 32.3
CDE12G0970 Ceratophyllum demersum HOM05D007894 ORTHO05D009691 3.4e-16 89.7 172 36.0
HPP92_007394 Vanilla planifolia HOM05D007894 ORTHO05D009691 2.0e-11 73.9 135 43.0
SEGI_01002 Sequoiadendron giganteum HOM05D001555 ORTHO05D009691 1.1e-09 68.2 202 26.7
ATR0620G121 Amborella trichopoda HOM05D007894 ORTHO05D009691 5.9e-08 62.4 326 26.7
unitig_62.g23645 Utricularia gibba HOM05D007894 ORTHO05D009691 3.8e-07 59.7 87 46.0
arahy.Tifrunner.gnm1.ann1.5IWW39 Arachis hypogaea HOM05D015518 ORTHO05D017458 8.5e-07 58.5 249 28.5
unitig_62.g23646 Utricularia gibba HOM05D007894 ORTHO05D009691 1.9e-06 57.4 80 43.8
Oeu042615.1 Olea europaea HOM05D040519 ORTHO05D009691 9.4e-06 55.1 96 34.4


User provided reference genes

Program Settings