Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.2e-236 823.2 524 100.0
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 6.9e-213 744.2 537 89.2
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.2e-187 659.4 522 80.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.2e-186 654.4 523 78.0
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.0e-168 595.9 441 83.9
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 8.8e-168 594.3 518 71.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.0e-167 593.2 544 75.6
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.3e-167 592.4 454 77.1
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.1e-165 587.4 525 77.5
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.8e-165 586.6 454 76.2
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 9.1e-165 584.3 462 75.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.2e-164 583.9 457 81.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.2e-164 583.9 452 80.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.0e-164 583.2 454 76.4
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.5e-164 582.4 454 76.2
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 5.9e-164 581.6 538 72.9
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.9e-163 579.3 533 69.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.8e-163 578.9 451 75.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 6.5e-163 578.2 542 67.5
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.5e-162 577.0 528 77.5
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.2e-161 573.9 455 75.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.7e-161 572.0 433 78.1
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.0e-160 570.9 458 78.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.8e-160 570.1 448 75.7
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 5.2e-160 568.5 455 74.1
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-159 567.4 455 77.8
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.4e-159 565.5 475 76.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 7.5e-159 564.7 395 90.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 9.7e-159 564.3 556 64.4
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.8e-158 562.8 525 72.8
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 3.7e-158 562.4 441 81.2
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-158 562.0 454 80.4
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.8e-157 560.1 534 75.3
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-157 560.1 526 73.4
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.4e-157 559.7 541 70.4
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.1e-157 559.3 538 74.2
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 4.1e-157 558.9 556 65.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.3e-157 558.5 533 73.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.3e-157 558.5 538 74.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.6e-156 557.0 557 69.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.7e-156 556.2 536 70.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.5e-154 550.4 540 70.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.4e-154 547.7 546 62.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 4.7e-153 545.4 525 68.8
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.0e-152 544.3 462 70.6
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.4e-152 543.9 550 63.5
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.8e-152 543.5 468 77.1
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-152 542.3 459 76.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.0e-152 542.3 558 64.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 4.0e-152 542.3 450 78.2
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 5.2e-152 542.0 460 76.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 5.2e-152 542.0 427 76.8
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 6.8e-152 541.6 477 65.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.5e-151 540.4 464 71.8
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.0e-151 540.0 473 74.0
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.6e-151 539.7 403 78.7
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 4.4e-151 538.9 459 76.5
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.8e-151 537.7 459 76.3
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.3e-150 537.3 426 75.8
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.7e-150 537.0 468 70.1
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.7e-150 537.0 436 79.4
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.7e-150 537.0 528 67.4
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.2e-150 536.6 447 73.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 4.8e-150 535.4 528 67.6
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 6.3e-150 535.0 462 69.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.4e-149 533.1 556 66.7
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.1e-149 532.7 460 73.5
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.5e-148 528.9 536 67.4
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.5e-148 528.9 458 73.6
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.5e-148 528.9 537 67.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.0e-147 527.7 439 74.9
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.0e-147 527.7 541 66.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 2.3e-147 526.6 458 73.1
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 2.3e-147 526.6 458 73.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.3e-147 526.6 527 68.9
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-147 525.4 522 70.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 8.6e-147 524.6 532 68.2
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.5e-146 523.1 558 68.5
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 3.2e-146 522.7 431 76.6
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 4.2e-146 522.3 460 67.6
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 4.2e-146 522.3 453 73.1
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.2e-146 522.3 453 73.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.5e-146 521.9 457 74.8
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 7.2e-146 521.5 453 73.1
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.5e-146 521.2 522 69.7
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.6e-145 520.4 476 67.9
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.6e-145 519.2 548 67.2
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.4e-144 517.3 612 53.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.3e-144 516.5 539 68.6
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.2e-144 515.4 453 75.7
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-143 514.2 438 75.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.0e-143 513.5 552 67.2
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 2.6e-143 513.1 431 71.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 5.7e-143 511.9 457 74.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 9.2e-141 504.6 402 75.4
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.6e-139 498.4 463 72.8
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 6.6e-139 498.4 449 73.9
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.5e-138 496.5 444 70.9
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.1e-137 493.4 381 75.6
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 8.0e-137 491.5 523 70.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 4.0e-136 489.2 525 69.7
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 9.8e-135 484.6 464 60.8
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.1e-133 481.1 356 74.2
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.6e-132 475.7 463 63.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.9e-132 475.3 467 65.7
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.0e-131 472.2 422 74.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.6e-129 467.2 455 66.4
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 8.0e-129 464.9 422 73.7
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.7e-124 449.9 443 69.1
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.3e-123 446.8 466 67.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.8e-120 437.2 468 62.8
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 9.9e-119 431.4 419 70.6
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-118 430.6 449 67.5
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.5e-114 417.5 424 70.5
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 8.1e-113 411.8 415 65.1
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.2e-111 407.9 478 53.1
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.4e-109 399.1 476 58.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 4.6e-108 396.0 421 66.0
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.0e-103 380.6 346 68.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.1e-96 358.2 329 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 3.1e-96 356.7 426 58.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 8.4e-94 348.6 344 73.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.2e-93 346.3 407 58.0
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.9e-90 337.4 326 75.5
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 9.0e-88 328.6 601 45.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 6.7e-83 312.4 390 56.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.6e-81 307.8 279 58.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 6.0e-76 289.3 475 47.6
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 6.0e-76 289.3 303 75.2
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.3e-75 287.3 239 64.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.9e-61 241.1 378 40.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.9e-56 222.6 152 70.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 5.2e-51 206.5 130 79.2
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-50 204.9 141 68.8
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.3e-50 203.8 141 68.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.4e-50 202.6 141 68.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 4.5e-47 193.4 182 58.2
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-46 191.4 168 59.5
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-44 183.0 134 64.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-43 181.8 134 64.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-38 163.7 171 52.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-36 158.3 128 60.9
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.8e-35 152.5 95 81.1
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.5e-29 133.3 106 62.3
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.7e-28 130.2 74 81.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-25 122.1 91 65.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.8e-25 120.9 461 26.2
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.8e-19 101.7 209 34.0
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 4.0e-19 100.5 56 85.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.4e-16 90.1 55 76.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.6e-14 82.8 71 67.6
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.3e-13 79.7 52 78.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 8.0e-12 76.3 82 56.1
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 8.3e-09 66.2 106 41.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 9.2e-08 62.8 123 36.6
QL02p028181 Quercus lobata HOM05D004623 ORTHO05D005100 4.6e-07 60.5 63 58.7


User provided reference genes

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