Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011911 Carpinus fangiana HOM05D000275 ORTHO05D000181 4.2e-59 231.1 113 100.0
Haze_09187 Corylus avellana HOM05D000275 ORTHO05D000181 1.7e-39 166.0 95 78.9
CiPaw.12G083200 Carya illinoinensis HOM05D033107 ORTHO05D000181 9.5e-19 97.1 113 45.1
Prupe.5G118600 Prunus persica HOM05D000275 ORTHO05D000181 5.2e-17 91.3 107 40.2
Manes.02G010200 Manihot esculenta HOM05D000275 ORTHO05D000181 8.9e-17 90.5 107 37.4
Nn1g09584 Nelumbo nucifera HOM05D000275 ORTHO05D000181 4.4e-16 88.2 101 37.6
Haze_25363 Corylus avellana HOM05D033107 ORTHO05D000181 7.5e-16 87.4 115 40.9
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 7.0e-14 80.9 107 37.4
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 1.2e-13 80.1 84 36.9
Atru.chr9.1983 Acer truncatum HOM05D000275 ORTHO05D000181 2.0e-13 79.3 91 35.2
Atru.chr9.1997 Acer truncatum HOM05D000275 ORTHO05D000181 2.0e-13 79.3 91 35.2
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.0e-12 77.0 97 36.1
PSO210G3257 Papaver somniferum HOM05D000275 ORTHO05D000181 1.3e-12 76.6 97 40.2
Prupe.5G119400 Prunus persica HOM05D000354 ORTHO05D000181 1.3e-12 76.6 115 32.2
Phvul.006G112211 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.7e-12 76.3 106 34.0
Actinidia10131 Actinidia chinensis HOM05D000275 ORTHO05D000181 3.0e-12 75.5 117 36.8
Actinidia22158 Actinidia chinensis HOM05D000275 ORTHO05D000181 3.0e-12 75.5 81 37.0
Prupe.5G119200 Prunus persica HOM05D000354 ORTHO05D000181 3.9e-12 75.1 115 32.2
Ciclev10022824m.g Citrus clementina HOM05D000275 ORTHO05D000181 5.0e-12 74.7 89 36.0
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 8.6e-12 73.9 115 33.9
Dinv32580 Davidia involucrata HOM05D009669 ORTHO05D000181 8.6e-12 73.9 100 36.0
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.1e-11 73.6 125 35.2
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 4.3e-11 71.6 103 32.0
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 5.6e-11 71.2 117 35.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 5.6e-11 71.2 92 30.4
Gohir.A08G034200 Gossypium hirsutum HOM05D000275 ORTHO05D000181 7.3e-11 70.9 108 34.3
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 9.5e-11 70.5 108 35.2
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.6e-10 69.7 108 30.6
CANSAT56G2214 Cannabis sativa HOM05D000275 ORTHO05D000181 2.1e-10 69.3 112 29.5
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 3.6e-10 68.6 103 30.1
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 3.6e-10 68.6 96 34.4
Sopen01g036140 Solanum pennellii HOM05D000275 ORTHO05D000181 3.6e-10 68.6 100 35.0
Ciclev10024405m.g Citrus clementina HOM05D000275 ORTHO05D000181 4.7e-10 68.2 81 37.0
MD06G1106500 Malus domestica HOM05D009669 ORTHO05D000181 4.7e-10 68.2 114 31.6
Solyc01g090350.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 4.7e-10 68.2 110 34.5
CANSAT56G1709 Cannabis sativa HOM05D000275 ORTHO05D000181 1.1e-09 67.0 113 28.3
Migut.B01858 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.1e-09 67.0 112 32.1
PGSC0003DMG400025988 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.1e-09 67.0 110 34.5
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 1.4e-09 66.6 90 31.1
CsaV3_3G008100 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.4e-09 66.6 96 30.2
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 1.4e-09 66.6 98 32.7
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.4e-09 66.6 98 32.7
MD06G1106400 Malus domestica HOM05D000275 ORTHO05D000181 1.4e-09 66.6 64 37.5
PGR042G1181 Punica granatum HOM05D000275 ORTHO05D000181 2.3e-09 65.9 109 34.9
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.1e-09 65.5 98 31.6
Lalb_Chr10g0106431 Lupinus albus HOM05D000275 ORTHO05D000181 3.1e-09 65.5 108 34.3
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 3.1e-09 65.5 107 30.8
MBI04_g37006_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 3.1e-09 65.5 94 29.8
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 3.1e-09 65.5 108 34.3
Os11g0115100 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.1e-09 65.5 101 28.7
Os12g0114800 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.1e-09 65.5 101 28.7
ATR0765G001 Amborella trichopoda HOM05D000275 ORTHO05D000181 4.0e-09 65.1 104 32.7
CAN.G1473.25 Capsicum annuum HOM05D000275 ORTHO05D000181 6.8e-09 64.3 110 32.7
CAN.G1473.26 Capsicum annuum HOM05D000275 ORTHO05D000181 6.8e-09 64.3 110 32.7
Sc01g0002760 Simmondsia chinensis HOM05D000275 ORTHO05D000181 1.2e-08 63.5 102 28.4
AUR62023470 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.5e-08 63.2 100 29.0
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 1.5e-08 63.2 104 27.9
TWI59G0931 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 1.5e-08 63.2 110 31.8
Carub.0003s0790 Capsella rubella HOM05D000275 ORTHO05D000181 2.0e-08 62.8 103 35.0
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 2.0e-08 62.8 96 29.2
PGSC0003DMG400025987 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.0e-08 62.8 105 32.4
EL10Ac7g17082 Beta vulgaris HOM05D000275 ORTHO05D000181 3.4e-08 62.0 76 34.2
Rhsim13G0125200 Rhododendron simsii HOM05D000275 ORTHO05D010802 3.4e-08 62.0 92 27.2
Solyc01g090360.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 3.4e-08 62.0 100 32.0
Sopen01g036150 Solanum pennellii HOM05D000275 ORTHO05D000181 3.4e-08 62.0 100 32.0
AUR62004483 Chenopodium quinoa HOM05D000275 ORTHO05D000181 4.4e-08 61.6 97 25.8
Migut.H00916 Erythranthe guttata HOM05D000275 ORTHO05D000181 4.4e-08 61.6 103 30.1
Lalb_Chr21g0316631 Lupinus albus HOM05D000275 ORTHO05D000181 4.4e-08 61.6 109 29.4
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 5.8e-08 61.2 98 27.6
FAN03G2574 Fragaria x ananassa HOM05D000275 ORTHO05D000181 5.8e-08 61.2 98 30.6
Rhsim02G0242900 Rhododendron simsii HOM05D000324 ORTHO05D001014 5.8e-08 61.2 97 35.1
ATR0213G029 Amborella trichopoda HOM05D000275 ORTHO05D000181 7.5e-08 60.8 104 32.7
Cpa.g.c30210.2 Carica papaya HOM05D000275 ORTHO05D010802 7.5e-08 60.8 105 27.6
ClCG05G000860 Citrullus lanatus HOM05D000275 ORTHO05D000181 9.9e-08 60.5 117 29.9
CAN.G1473.29 Capsicum annuum HOM05D000275 ORTHO05D000181 1.3e-07 60.1 105 31.4
CAN.G986.14 Capsicum annuum HOM05D000275 ORTHO05D000181 1.3e-07 60.1 116 28.4
Cpa.g.sc489.7 Carica papaya HOM05D000275 ORTHO05D010802 1.3e-07 60.1 96 29.2
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 1.3e-07 60.1 78 29.5
Medtr4g029390 Medicago truncatula HOM05D000275 ORTHO05D000181 1.3e-07 60.1 99 32.3
Sed0020486 Sechium edule HOM05D000275 ORTHO05D000181 1.3e-07 60.1 109 32.1
Medtr4g029350 Medicago truncatula HOM05D000275 ORTHO05D000181 1.7e-07 59.7 99 30.3
Cc02_g25070 Coffea canephora HOM05D000275 ORTHO05D000181 2.2e-07 59.3 103 31.1
Migut.N01746 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.2e-07 59.3 102 29.4
CAN.G1473.30 Capsicum annuum HOM05D000275 ORTHO05D000181 2.9e-07 58.9 79 31.6
Ciclev10018033m.g Citrus clementina HOM05D000275 ORTHO05D010802 2.9e-07 58.9 100 26.0
Migut.N01745 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.9e-07 58.9 104 26.9
Thecc.06G008800 Theobroma cacao HOM05D000275 ORTHO05D010802 2.9e-07 58.9 99 24.2
Migut.N01742 Erythranthe guttata HOM05D000275 ORTHO05D000181 3.7e-07 58.5 101 28.7
Actinidia29298 Actinidia chinensis HOM05D000275 ORTHO05D010802 8.3e-07 57.4 96 24.0
Migut.N01747 Erythranthe guttata HOM05D000275 ORTHO05D000181 8.3e-07 57.4 101 28.7
Migut.N01748 Erythranthe guttata HOM05D000275 ORTHO05D000181 8.3e-07 57.4 101 28.7
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 8.3e-07 57.4 102 26.5
Nitab4.5_0003696g0090 Nicotiana tabacum HOM05D000275 ORTHO05D000181 8.3e-07 57.4 79 31.6
Nitab4.5_0006615g0020 Nicotiana tabacum HOM05D000275 ORTHO05D000181 8.3e-07 57.4 98 31.6
Ah.08g209500 Amaranthus hybridus HOM05D000275 ORTHO05D000181 1.1e-06 57.0 96 28.1
Gohir.A05G112400 Gossypium hirsutum HOM05D000275 ORTHO05D010802 1.1e-06 57.0 105 24.8
Nitab4.5_0003696g0070 Nicotiana tabacum HOM05D000275 ORTHO05D000181 1.1e-06 57.0 104 30.8
CSS0002937 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 1.4e-06 56.6 107 29.0
SalBow3G1637 Salvia bowleyana HOM05D009669 ORTHO05D000181 1.4e-06 56.6 105 27.6
Sp3g31780 Schrenkiella parvula HOM05D000275 ORTHO05D000181 1.4e-06 56.6 97 27.8
SpUn0030_0050 Schrenkiella parvula HOM05D000275 ORTHO05D000181 1.4e-06 56.6 97 27.8
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.4e-06 56.6 97 27.8
Aa31sc23G310 Aethionema arabicum HOM05D000275 ORTHO05D000181 1.9e-06 56.2 101 25.7
CAN.G986.15 Capsicum annuum HOM05D000275 ORTHO05D000181 1.9e-06 56.2 112 29.5
AT2G18370 Arabidopsis thaliana HOM05D000275 ORTHO05D000181 2.4e-06 55.8 75 28.0
arahy.Tifrunner.gnm1.ann1.5IM6J0 Arachis hypogaea HOM05D000275 ORTHO05D000181 2.4e-06 55.8 100 30.0
CANSAT35G1080 Cannabis sativa HOM05D000275 ORTHO05D000181 2.4e-06 55.8 101 33.7
CARHR108960 Cardamine hirsuta HOM05D000275 ORTHO05D000181 2.4e-06 55.8 75 28.0
COL.COLO4_26882 Corchorus olitorius HOM05D000275 ORTHO05D010802 2.4e-06 55.8 98 25.5
Haze_16254 Corylus avellana HOM05D033107 ORTHO05D000181 2.4e-06 55.8 81 40.7
DCAR_009799 Daucus carota HOM05D000275 ORTHO05D000181 2.4e-06 55.8 110 27.3
Duzib205G0001 Durio zibethinus HOM05D000275 ORTHO05D000181 2.4e-06 55.8 112 25.9
Nitab4.5_0000851g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 3.2e-06 55.5 105 29.5
Nitab4.5_0006615g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 3.2e-06 55.5 105 30.5
TWI23G1017 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 3.2e-06 55.5 99 32.3
COL.COLO4_26881 Corchorus olitorius HOM05D000275 ORTHO05D010802 4.1e-06 55.1 98 24.5
Dinv43624 Davidia involucrata HOM05D000275 ORTHO05D000181 4.1e-06 55.1 100 32.0
Glyma.09G278000 Glycine max HOM05D000275 ORTHO05D000181 4.1e-06 55.1 98 26.5
Gorai.009G117000 Gossypium raimondii HOM05D000275 ORTHO05D010802 4.1e-06 55.1 99 23.2
HanXRQChr15g0463551 Helianthus annuus HOM05D000275 ORTHO05D000181 4.1e-06 55.1 101 30.7
Manes.06G051600 Manihot esculenta HOM05D000275 ORTHO05D010802 4.1e-06 55.1 98 24.5
VMungo0331G1570 Vigna mungo HOM05D000275 ORTHO05D000181 4.1e-06 55.1 94 31.9
A03p36370 Brassica napus HOM05D000275 ORTHO05D000181 5.4e-06 54.7 97 28.9
A03p36390 Brassica napus HOM05D000275 ORTHO05D000181 5.4e-06 54.7 97 28.9
BraA03t12807Z Brassica rapa HOM05D000275 ORTHO05D000181 5.4e-06 54.7 97 28.9
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 5.4e-06 54.7 94 27.7
HanXRQChr15g0463591 Helianthus annuus HOM05D000275 ORTHO05D000181 5.4e-06 54.7 102 30.4
HanXRQChr15g0488351 Helianthus annuus HOM05D000275 ORTHO05D000181 5.4e-06 54.7 100 29.0
PSO541G4088 Papaver somniferum HOM05D000275 ORTHO05D000181 5.4e-06 54.7 111 28.8
Thecc.04G152700 Theobroma cacao HOM05D000275 ORTHO05D000181 5.4e-06 54.7 102 27.5
Manes.06G051500 Manihot esculenta HOM05D000275 ORTHO05D010802 7.1e-06 54.3 98 23.5
Medtr3g464110 Medicago truncatula HOM05D000275 ORTHO05D003378 7.1e-06 54.3 73 35.6
CSS0038340 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 9.2e-06 53.9 107 28.0
CAN.G62.7 Capsicum annuum HOM05D000275 ORTHO05D000181 9.2e-06 53.9 102 31.4
Peaxi162Scf01343g00142 Petunia axillaris HOM05D000275 ORTHO05D000181 9.2e-06 53.9 98 28.6


User provided reference genes

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