Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 2.5e-37 158.3 83 100.0
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 5.3e-35 150.6 83 95.2
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 2.7e-23 111.7 85 77.6
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 9.7e-21 103.2 83 75.9
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 3.2e-16 88.2 83 62.7
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 2.7e-15 85.1 88 63.6
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 3.6e-15 84.7 89 66.3
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 4.7e-15 84.3 86 64.0
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 4.7e-15 84.3 89 61.8
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 6.1e-15 84.0 87 64.4
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 6.1e-15 84.0 84 63.1
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 1.0e-14 83.2 85 64.7
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 1.4e-14 82.8 85 65.9
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 6.8e-14 80.5 83 66.3
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 2.6e-13 78.6 94 57.4
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 3.4e-13 78.2 83 61.4
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 3.4e-13 78.2 83 62.7
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 4.4e-13 77.8 83 63.9
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 7.5e-13 77.0 83 61.4
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 3.7e-12 74.7 83 60.2
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 4.8e-12 74.3 83 61.4
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 4.8e-12 74.3 83 60.2
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 4.8e-12 74.3 83 61.4
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 2.4e-11 72.0 83 60.2
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 2.4e-11 72.0 83 60.2
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 5.4e-11 70.9 83 63.9
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 5.4e-11 70.9 83 61.4
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 9.1e-11 70.1 83 56.6
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 2.0e-10 68.9 83 57.8
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 3.5e-10 68.2 83 53.0
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 3.5e-10 68.2 83 53.0
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 5.9e-10 67.4 83 53.0
CsaV3_5G001550 Cucumis sativus L. HOM05D008304 ORTHO05D004056 1.0e-09 66.6 82 57.3
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 1.0e-09 66.6 83 56.6
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 1.3e-09 66.2 80 56.2
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 1.7e-09 65.9 84 52.4
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 2.2e-09 65.5 84 59.5
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 2.2e-09 65.5 83 55.4
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 6.5e-09 63.9 83 54.2
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 6.5e-09 63.9 83 54.2
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 6.5e-09 63.9 83 54.2
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 6.5e-09 63.9 83 54.2
Nn1g00437 Nelumbo nucifera HOM05D008304 ORTHO05D004056 8.5e-09 63.5 83 51.8
CAN.G567.106 Capsicum annuum HOM05D008304 ORTHO05D004056 1.1e-08 63.2 77 54.5
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 1.1e-08 63.2 83 51.8
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 1.5e-08 62.8 83 55.4
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 1.5e-08 62.8 83 55.4
Migut.E00724 Erythranthe guttata HOM05D008304 ORTHO05D004056 2.5e-08 62.0 84 53.6
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 3.2e-08 61.6 84 52.4
PGR042G2542 Punica granatum HOM05D008304 ORTHO05D004056 3.2e-08 61.6 87 51.7
Cc08_g16980 Coffea canephora HOM05D008304 ORTHO05D004056 7.2e-08 60.5 89 55.1
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 9.4e-08 60.1 83 54.2
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 8.0e-07 57.0 83 50.6
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 2.3e-06 55.5 83 51.8
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 2.3e-06 55.5 83 53.0
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 3.0e-06 55.1 83 45.8
Aqoxy1G02469 Aquilegia oxysepala HOM05D005953 ORTHO05D004056 4.0e-06 54.7 85 49.4
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 4.0e-06 54.7 83 54.2
RcHm_v2.0_Chr7g0187581 Rosa chinensis HOM05D008304 ORTHO05D004056 4.0e-06 54.7 29 86.2
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 6.8e-06 53.9 83 48.2
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 6.8e-06 53.9 83 50.6
BcaB06g27689 Brassica carinata HOM05D010428 ORTHO05D012179 8.8e-06 53.5 83 47.0
CDE02G2683 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 8.8e-06 53.5 83 48.2


User provided reference genes

Program Settings