Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011897 Carpinus fangiana HOM05D019613 ORTHO05D006961 5.7e-37 157.1 84 100.0
Haze_09201 Corylus avellana HOM05D019613 ORTHO05D006961 3.7e-28 127.9 89 80.9
Haze_09155 Corylus avellana HOM05D019613 ORTHO05D006961 5.6e-16 87.4 70 72.9
Haze_09161 Corylus avellana HOM05D019613 ORTHO05D006961 5.6e-16 87.4 70 72.9
Haze_09202 Corylus avellana HOM05D019613 ORTHO05D043595 2.8e-15 85.1 65 75.4
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 4.0e-14 81.3 97 54.6
Cfa011936 Carpinus fangiana HOM05D019613 ORTHO05D043595 1.2e-13 79.7 64 68.8
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 9.9e-13 76.6 85 57.6
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 8.4e-12 73.6 85 55.3
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.4e-11 72.0 88 51.1
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.2e-11 71.6 88 51.1
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 4.1e-11 71.2 88 51.1
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 7.8e-10 67.0 83 49.4
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 1.3e-09 66.2 83 50.6
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 1.3e-09 66.2 81 46.9
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.3e-09 65.5 83 49.4
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 3.0e-09 65.1 81 46.9
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 1.9e-08 62.4 93 44.1
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 2.5e-08 62.0 89 47.2
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 3.3e-08 61.6 88 45.5
AL1G47200 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 3.3e-08 61.6 82 46.3
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 5.6e-08 60.8 93 47.3
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 5.6e-08 60.8 93 45.2
vmacro11487 Vaccinium macrocarpon HOM05D008613 ORTHO05D006961 5.6e-08 60.8 97 40.2
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.2e-07 59.7 91 44.0
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.2e-07 59.7 91 44.0
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.6e-07 59.3 91 44.0
Rhsim02G0253700 Rhododendron simsii HOM05D008613 ORTHO05D006961 1.6e-07 59.3 81 48.1
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 1.6e-07 59.3 93 46.2
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.6e-07 59.3 91 45.1
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 8.1e-07 57.0 86 48.8
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 8.1e-07 57.0 86 48.8
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 8.1e-07 57.0 86 48.8
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 8.1e-07 57.0 86 48.8
AT1G32920 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 1.1e-06 56.6 82 43.9
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 1.1e-06 56.6 84 44.0
CARHR032240 Cardamine hirsuta HOM05D008703 ORTHO05D006961 1.1e-06 56.6 84 42.9
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 1.1e-06 56.6 82 45.1
Prupe.5G133200 Prunus persica HOM05D008613 ORTHO05D006961 1.4e-06 56.2 97 44.3
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 2.4e-06 55.5 91 42.9
Aa31LG6G7510 Aethionema arabicum HOM05D008703 ORTHO05D006961 3.1e-06 55.1 88 43.2
CARHR256120 Cardamine hirsuta HOM05D008703 ORTHO05D006961 6.9e-06 53.9 84 44.0


User provided reference genes

Program Settings