Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011867 Carpinus fangiana HOM05D007528 ORTHO05D008503 2.4e-40 168.3 80 100.0
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 7.2e-37 156.8 75 96.0
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 1.7e-17 92.4 59 67.8
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 2.2e-17 92.0 59 71.2
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 1.1e-16 89.7 59 66.1
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 4.1e-16 87.8 60 70.0
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 4.1e-16 87.8 56 69.6
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 1.2e-15 86.3 60 66.7
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 1.6e-15 85.9 59 64.4
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 1.0e-14 83.2 61 65.6
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 1.7e-14 82.4 60 65.0
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 3.8e-14 81.3 60 61.7
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 3.8e-14 81.3 59 61.0
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 5.0e-14 80.9 63 65.1
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 1.1e-13 79.7 59 59.3
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 1.1e-13 79.7 60 60.0
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 1.1e-13 79.7 59 59.3
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 1.9e-13 79.0 59 57.6
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 1.9e-13 79.0 50 64.0
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 1.9e-13 79.0 59 61.0
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 2.5e-13 78.6 56 69.6
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 3.2e-13 78.2 59 61.0
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 7.2e-13 77.0 56 67.9
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 9.4e-13 76.6 61 55.7
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 9.4e-13 76.6 59 57.6
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 1.2e-12 76.3 63 57.1
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 1.2e-12 76.3 72 51.4
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 1.6e-12 75.9 59 55.9
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 2.7e-12 75.1 63 55.6
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 3.6e-12 74.7 59 55.9
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 4.7e-12 74.3 61 59.0
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 6.1e-12 73.9 59 54.2
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 6.1e-12 73.9 59 59.3
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 1.0e-11 73.2 78 48.7
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 1.4e-11 72.8 60 60.0
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 1.4e-11 72.8 80 45.0
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 2.3e-11 72.0 59 57.6
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 2.3e-11 72.0 59 64.4
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 2.3e-11 72.0 59 64.4
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 2.3e-11 72.0 50 68.0
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 3.0e-11 71.6 59 52.5
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 5.2e-11 70.9 59 64.4
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 6.7e-11 70.5 59 62.7
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.5e-10 69.3 59 62.7
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 1.5e-10 69.3 59 52.5
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 1.5e-10 69.3 80 43.8
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 2.0e-10 68.9 60 60.0
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 2.6e-10 68.6 72 51.4
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 2.6e-10 68.6 61 54.1
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 3.3e-10 68.2 62 61.3
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 3.3e-10 68.2 60 56.7
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 4.4e-10 67.8 63 55.6
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 4.4e-10 67.8 59 54.2
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 9.7e-10 66.6 60 53.3
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 9.7e-10 66.6 60 53.3
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 1.7e-09 65.9 59 54.2
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 2.2e-09 65.5 62 50.0
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 2.8e-09 65.1 61 52.5
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 8.2e-09 63.5 71 42.3
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 1.8e-08 62.4 62 53.2
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 2.4e-08 62.0 60 48.3
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 9.1e-08 60.1 67 44.8
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 9.1e-08 60.1 67 50.7
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 2.0e-07 58.9 61 44.3
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 4.5e-07 57.8 56 48.2
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 4.5e-07 57.8 57 45.6
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 5.9e-07 57.4 41 61.0
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 7.7e-07 57.0 45 62.2
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 7.7e-07 57.0 59 47.5
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 7.7e-07 57.0 43 62.8
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 1.0e-06 56.6 41 58.5
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 1.3e-06 56.2 65 46.2
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 1.3e-06 56.2 65 46.2
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.7e-06 55.8 65 47.7
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 1.7e-06 55.8 65 46.2
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 2.2e-06 55.5 46 54.3
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 2.2e-06 55.5 65 47.7
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 2.9e-06 55.1 65 46.2
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 2.9e-06 55.1 65 44.6
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 2.9e-06 55.1 65 44.6
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 2.9e-06 55.1 65 44.6
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 6.5e-06 53.9 65 43.1


User provided reference genes

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