Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 4.1e-212 741.1 369 100.0
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 1.6e-35 154.5 91 85.7
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 2.4e-34 150.6 91 85.7
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 4.5e-25 119.8 101 63.4
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.4e-23 114.8 91 64.8
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 7.1e-23 112.5 91 64.8
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 7.1e-23 112.5 91 64.8
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.2e-22 111.7 91 64.8
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 2.1e-22 110.9 92 63.0
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 2.7e-22 110.5 101 58.4
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 3.5e-22 110.2 91 63.7
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.8e-21 107.8 92 64.1
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 1.8e-21 107.8 90 63.3
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 2.3e-21 107.5 91 60.4
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 5.1e-21 106.3 91 60.4
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 8.7e-21 105.5 91 59.3
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 1.5e-20 104.8 91 62.6
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 1.9e-20 104.4 104 51.9
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.5e-20 104.0 90 61.1
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 2.5e-20 104.0 90 63.3
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 4.3e-20 103.2 91 59.3
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 9.6e-20 102.1 91 58.2
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 9.6e-20 102.1 91 59.3
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 2.1e-19 100.9 91 57.1
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.1e-19 100.9 92 59.8
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 2.8e-19 100.5 90 63.3
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 3.7e-19 100.1 92 56.5
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 4.8e-19 99.8 90 58.9
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 4.8e-19 99.8 91 59.3
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 6.2e-19 99.4 90 57.8
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.1e-18 98.6 101 51.5
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.8e-18 97.8 94 56.4
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.8e-18 97.8 91 56.0
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 3.1e-18 97.1 101 53.5
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 6.9e-18 95.9 92 59.8
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.0e-17 94.4 91 57.1
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.0e-17 94.4 91 57.1
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 2.0e-17 94.4 96 52.1
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 2.0e-17 94.4 92 59.8
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 2.6e-17 94.0 91 58.2
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 3.4e-17 93.6 88 58.0
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 5.8e-17 92.8 90 55.6
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 7.6e-17 92.4 110 50.9
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 1.7e-16 91.3 91 53.8
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 2.2e-16 90.9 91 54.9
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 2.9e-16 90.5 105 52.4
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.9e-16 90.5 91 51.6
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 6.5e-16 89.4 103 53.4
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 6.5e-16 89.4 91 54.9
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 1.1e-15 88.6 78 60.3
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 1.1e-15 88.6 92 56.5
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 1.4e-15 88.2 90 53.3
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.4e-15 88.2 92 52.2
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 7.1e-15 85.9 117 44.4
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 1.2e-14 85.1 103 48.5
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.6e-14 84.7 89 55.1
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 1.6e-14 84.7 91 53.8
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 1.6e-14 84.7 79 57.0
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.1e-14 84.3 89 56.2
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 2.1e-14 84.3 91 52.7
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 2.1e-14 84.3 91 52.7
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 2.7e-14 84.0 89 51.7
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 3.5e-14 83.6 94 54.3
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 3.5e-14 83.6 99 49.5
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 6.1e-14 82.8 91 53.8
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 6.1e-14 82.8 91 54.9
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.8e-13 81.3 101 49.5
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.3e-13 80.9 90 53.3
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 2.3e-13 80.9 91 54.9
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 3.0e-13 80.5 90 54.4
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 3.0e-13 80.5 67 64.2
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 5.1e-13 79.7 90 50.0
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 6.7e-13 79.3 87 51.7
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 6.7e-13 79.3 66 57.6
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 6.7e-13 79.3 91 53.8
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 6.7e-13 79.3 91 47.3
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 6.7e-13 79.3 104 46.2
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 6.7e-13 79.3 88 53.4
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 8.7e-13 79.0 115 40.9
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 1.1e-12 78.6 91 51.6
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 1.5e-12 78.2 89 50.6
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 1.5e-12 78.2 91 51.6
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 3.3e-12 77.0 91 46.2
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 4.3e-12 76.6 84 53.6
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 5.7e-12 76.3 87 50.6
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 7.4e-12 75.9 102 46.1
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 9.7e-12 75.5 102 46.1
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 1.3e-11 75.1 77 57.1
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 1.3e-11 75.1 90 51.1
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.6e-11 74.7 88 51.1
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.2e-11 74.3 105 42.9
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 2.8e-11 73.9 101 43.6
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.8e-11 73.9 85 49.4
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 2.8e-11 73.9 89 48.3
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 3.7e-11 73.6 87 47.1
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 3.7e-11 73.6 101 43.6
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 3.7e-11 73.6 91 47.3
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 8.2e-11 72.4 102 48.0
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 8.2e-11 72.4 78 48.7
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 8.2e-11 72.4 78 48.7
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.4e-10 71.6 85 48.2
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 1.8e-10 71.2 101 42.6
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 2.4e-10 70.9 101 45.5
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 4.1e-10 70.1 101 45.5
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 4.1e-10 70.1 101 45.5
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 4.1e-10 70.1 90 45.6
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 5.3e-10 69.7 114 41.2
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 6.9e-10 69.3 92 44.6
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 6.9e-10 69.3 101 41.6
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 6.9e-10 69.3 88 44.3
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 6.9e-10 69.3 94 47.9
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 6.9e-10 69.3 101 43.6
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 6.9e-10 69.3 90 46.7
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.2e-09 68.6 88 45.5
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.2e-09 68.6 94 42.6
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 1.5e-09 68.2 90 47.8
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 4.5e-09 66.6 102 44.1
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 4.5e-09 66.6 77 49.4
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 4.5e-09 66.6 89 47.2
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 5.9e-09 66.2 88 46.6
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 7.7e-09 65.9 92 46.7
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.0e-08 65.5 92 42.4
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 1.0e-08 65.5 118 39.0
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.3e-08 65.1 86 48.8
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.7e-08 64.7 101 39.6
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 1.7e-08 64.7 90 45.6
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 3.8e-08 63.5 79 49.4
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 5.0e-08 63.2 94 40.4
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 5.0e-08 63.2 91 46.2
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 5.0e-08 63.2 94 40.4
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 6.5e-08 62.8 79 50.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 6.5e-08 62.8 79 50.6
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 1.1e-07 62.0 77 46.8
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.4e-07 61.6 102 43.1
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 1.4e-07 61.6 77 45.5
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 1.4e-07 61.6 91 42.9
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 1.9e-07 61.2 77 46.8
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 1.9e-07 61.2 77 46.8
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 4.2e-07 60.1 78 46.2
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 4.2e-07 60.1 77 49.4
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.7e-06 57.4 86 46.5
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 4.6e-06 56.6 105 40.0


User provided reference genes

Program Settings