Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.5e-28 127.5 61 100.0
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.1e-18 95.9 55 81.8
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.5e-18 94.7 61 70.5
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.3e-17 92.4 49 79.6
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-17 92.4 53 81.1
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.3e-17 92.4 53 81.1
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.6e-17 92.0 51 82.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 6.3e-17 90.1 53 77.4
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.2e-17 89.7 49 81.6
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 8.2e-17 89.7 49 81.6
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.4e-16 89.0 57 73.7
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.8e-16 88.6 47 83.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.8e-16 88.6 60 75.0
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.4e-16 88.2 60 66.7
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.4e-16 88.2 60 73.3
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.4e-16 88.2 52 80.8
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 4.1e-16 87.4 57 71.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 4.1e-16 87.4 49 77.6
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.5e-15 85.5 58 62.1
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 3.4e-15 84.3 58 67.2
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 4.5e-15 84.0 49 71.4
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 4.5e-15 84.0 49 71.4
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 4.5e-15 84.0 49 71.4
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.9e-15 83.6 58 60.3
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.9e-15 83.6 58 60.3
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 7.7e-15 83.2 58 60.3
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.7e-14 82.0 51 68.6
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.7e-14 82.0 49 73.5
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 2.9e-14 81.3 49 75.5
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.9e-14 81.3 61 59.0
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 8.5e-14 79.7 49 67.3
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 8.5e-14 79.7 52 67.3
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.4e-13 79.0 49 71.4
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 2.5e-13 78.2 49 69.4
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.5e-13 78.2 49 67.3
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 5.5e-13 77.0 56 67.9
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 7.2e-13 76.6 49 65.3
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 7.2e-13 76.6 58 62.1
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.4e-13 76.3 60 56.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 9.4e-13 76.3 58 62.1
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 9.4e-13 76.3 58 62.1
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-12 75.9 59 61.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 2.1e-12 75.1 51 62.7
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.7e-12 74.7 47 72.3
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.6e-12 74.3 55 60.0
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.6e-12 73.9 75 48.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 4.6e-12 73.9 59 66.1
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 4.6e-12 73.9 57 57.9
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 6.1e-12 73.6 54 61.1
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 6.1e-12 73.6 51 62.7
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 7.9e-12 73.2 49 69.4
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.4e-11 72.4 56 55.4
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.4e-11 72.4 50 62.0
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 2.3e-11 71.6 47 63.8
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 3.0e-11 71.2 47 66.0
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 3.0e-11 71.2 47 66.0
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 3.0e-11 71.2 47 63.8
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 3.9e-11 70.9 52 57.7
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 5.1e-11 70.5 49 65.3
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 5.1e-11 70.5 55 58.2
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 8.8e-11 69.7 47 63.8
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 8.8e-11 69.7 64 53.1
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 8.8e-11 69.7 59 61.0
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.1e-10 69.3 46 60.9
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 51.7
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-10 69.3 46 60.9
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 51.7
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 51.7
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.5e-10 68.9 46 60.9
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 1.5e-10 68.9 46 60.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 1.5e-10 68.9 46 60.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.5e-10 68.9 47 63.8
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 2.0e-10 68.6 58 51.7
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 2.0e-10 68.6 45 62.2
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.6e-10 68.2 54 53.7
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 3.3e-10 67.8 49 55.1
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 3.3e-10 67.8 49 55.1
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 4.4e-10 67.4 42 64.3
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 7.4e-10 66.6 54 48.1
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.3e-09 65.9 58 58.6
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.7e-09 65.5 49 53.1
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.7e-09 65.5 49 53.1
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 2.2e-09 65.1 47 59.6
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.8e-09 64.7 89 40.4
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 3.7e-09 64.3 56 53.6
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 8.2e-09 63.2 54 46.3
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 8.2e-09 63.2 54 55.6
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 1.1e-08 62.8 47 59.6
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 2.4e-08 61.6 42 66.7
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 3.1e-08 61.2 37 62.2
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.1e-08 60.8 31 74.2
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 5.3e-08 60.5 54 44.4
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 5.3e-08 60.5 54 44.4
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 6.9e-08 60.1 51 51.0
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 2.0e-07 58.5 39 71.8
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 2.6e-07 58.2 58 53.4
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 3.4e-07 57.8 44 52.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.7e-06 55.5 64 50.0
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.9e-06 54.7 33 75.8
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 5.0e-06 53.9 34 73.5


User provided reference genes

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