Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011815 Carpinus fangiana HOM05D007349 ORTHO05D009317 5.0e-131 471.1 235 100.0
Haze_11590 Corylus avellana HOM05D007349 ORTHO05D009317 6.6e-91 337.8 168 96.4
QL06p023778 Quercus lobata HOM05D007349 ORTHO05D009317 1.4e-85 320.1 255 67.5
CiPaw.01G123800 Carya illinoinensis HOM05D007349 ORTHO05D009317 7.1e-85 317.8 233 73.0
Dinv29576 Davidia involucrata HOM05D007349 ORTHO05D009317 1.1e-61 240.7 235 55.7
Dinv29581 Davidia involucrata HOM05D007349 ORTHO05D009317 1.4e-61 240.4 235 56.2
GSVIVG01029086001 Vitis vinifera HOM05D007349 ORTHO05D009317 4.6e-60 235.3 235 54.9
Ciclev10005791m.g Citrus clementina HOM05D007349 ORTHO05D009317 6.9e-56 221.5 237 54.4
Hma1.2p1_2958F.1_g330790 Hydrangea macrophylla HOM05D007349 ORTHO05D009317 2.6e-55 219.5 235 54.0
TWI09G1137 Tripterygium wilfordii HOM05D007349 ORTHO05D009317 1.7e-54 216.9 247 51.4
Manes.03G149400 Manihot esculenta HOM05D007349 ORTHO05D009317 5.0e-54 215.3 246 52.8
Duzib212G0593 Durio zibethinus HOM05D007349 ORTHO05D009317 1.9e-53 213.4 236 55.1
CSS0029747 Camellia sinensis var. sinensis HOM05D007349 ORTHO05D009317 1.2e-52 210.7 243 51.0
ClCG05G003470 Citrullus lanatus HOM05D007349 ORTHO05D009317 1.6e-52 210.3 240 51.7
Thecc.04G207000 Theobroma cacao HOM05D007349 ORTHO05D009317 1.6e-52 210.3 237 54.0
Nn3g19440 Nelumbo nucifera HOM05D007349 ORTHO05D009317 3.0e-51 206.1 246 51.6
Lalb_Chr21g0312631 Lupinus albus HOM05D007349 ORTHO05D009317 7.4e-50 201.4 236 51.3
Sabra03G0130400 Salix brachista HOM05D007349 ORTHO05D009317 1.7e-49 200.3 285 44.6
MD04G1004500 Malus domestica HOM05D007349 ORTHO05D009317 3.7e-49 199.1 233 51.1
Lj5g0019311 Lotus japonicus HOM05D007349 ORTHO05D009317 1.1e-48 197.6 239 51.0
Cpa.g.sc59.118 Carica papaya HOM05D007349 ORTHO05D009317 3.1e-48 196.1 240 51.2
CsaV3_3G011130 Cucumis sativus L. HOM05D007349 ORTHO05D009317 5.3e-48 195.3 243 49.4
Gohir.A09G052212 Gossypium hirsutum HOM05D007349 ORTHO05D009317 7.0e-48 194.9 241 53.9
Gorai.006G056500 Gossypium raimondii HOM05D007349 ORTHO05D009317 7.0e-48 194.9 241 53.9
Potri.003G177900 Populus trichocarpa HOM05D007349 ORTHO05D009317 4.5e-47 192.2 278 43.9
Sed0005273 Sechium edule HOM05D007349 ORTHO05D009317 7.7e-47 191.4 242 47.9
Rhsim09G0053700 Rhododendron simsii HOM05D007349 ORTHO05D009317 2.2e-46 189.9 243 48.1
Gohir.D09G052924 Gossypium hirsutum HOM05D007349 ORTHO05D009317 1.5e-45 187.2 241 52.3
Prupe.1G004200 Prunus persica HOM05D007349 ORTHO05D009317 1.9e-45 186.8 276 44.2
RcHm_v2.0_Chr4g0385541 Rosa chinensis HOM05D007349 ORTHO05D009317 2.5e-45 186.4 238 50.4
Psat0s3951g0040 Pisum sativum HOM05D007349 ORTHO05D009317 5.5e-45 185.3 238 47.9
Ca_10404_v3 Cicer arietinum L. HOM05D007349 ORTHO05D009317 9.4e-45 184.5 236 51.3
Phvul.007G134400 Phaseolus vulgaris HOM05D007349 ORTHO05D009317 2.1e-44 183.3 250 49.2
DCAR_024489 Daucus carota HOM05D007349 ORTHO05D009317 1.4e-43 180.6 230 48.7
PGR142G2055 Punica granatum HOM05D007349 ORTHO05D009317 4.0e-43 179.1 227 49.8
RcHm_v2.0_Chr6g0244431 Rosa chinensis HOM05D007349 ORTHO05D009317 1.5e-42 177.2 238 47.9
arahy.Tifrunner.gnm1.ann1.FV8RA9 Arachis hypogaea HOM05D007349 ORTHO05D009317 2.0e-42 176.8 243 51.0
MBI07_g23672_MAGBIO Magnolia biondii HOM05D007349 ORTHO05D009317 3.3e-42 176.0 241 46.1
VMungo0720G2898 Vigna mungo HOM05D007349 ORTHO05D009317 5.7e-42 175.3 241 47.3
FAN12G2695 Fragaria x ananassa HOM05D007349 ORTHO05D009317 1.3e-41 174.1 238 50.0
Medtr1g090010 Medicago truncatula HOM05D007349 ORTHO05D009317 1.7e-41 173.7 231 48.5
MELO3C006324.2 Cucumis melo HOM05D007349 ORTHO05D009317 2.2e-41 173.3 254 44.5
FvH4_4g00420 Fragaria vesca HOM05D007349 ORTHO05D009317 2.8e-41 172.9 238 50.0
Oeu026866.1 Olea europaea HOM05D007349 ORTHO05D009317 6.3e-41 171.8 278 39.9
Eucgr.H02845 Eucalyptus grandis HOM05D007349 ORTHO05D009317 7.0e-40 168.3 256 43.0
FAN22G0302 Fragaria x ananassa HOM05D007349 ORTHO05D009317 5.9e-39 165.2 250 47.6
TPR.G13407 Trifolium pratense HOM05D007349 ORTHO05D009317 5.0e-38 162.2 259 43.2
Glyma.10G192600 Glycine max HOM05D007349 ORTHO05D009317 6.5e-38 161.8 245 48.6
SalBow3G0646 Salvia bowleyana HOM05D007349 ORTHO05D009317 1.5e-37 160.6 237 43.9
CANSAT78G2317 Cannabis sativa HOM05D007349 ORTHO05D009317 1.9e-37 160.2 240 47.9
Nitab4.5_0008389g0020 Nicotiana tabacum HOM05D007349 ORTHO05D009317 2.5e-37 159.8 235 45.5
PSO210G4925 Papaver somniferum HOM05D007349 ORTHO05D009317 2.5e-37 159.8 237 43.5
HanXRQChr07g0185641 Helianthus annuus HOM05D007349 ORTHO05D009317 3.2e-37 159.5 236 41.1
Aqoxy5G00063 Aquilegia oxysepala HOM05D007349 ORTHO05D009317 4.2e-37 159.1 236 42.4
Cc03_g07560 Coffea canephora HOM05D007349 ORTHO05D009317 1.2e-36 157.5 249 43.4
Migut.N00367 Erythranthe guttata HOM05D007349 ORTHO05D009317 3.0e-35 152.9 236 42.8
PGSC0003DMG400016859 Solanum tuberosum HOM05D007349 ORTHO05D009317 3.0e-35 152.9 230 43.9
EL10Ac3g06899 Beta vulgaris HOM05D007349 ORTHO05D009317 1.4e-32 144.1 243 40.3
arahy.Tifrunner.gnm1.ann1.X6WBXQ Arachis hypogaea HOM05D007349 ORTHO05D009317 3.1e-32 142.9 175 52.0
CARHR219460 Cardamine hirsuta HOM05D007349 ORTHO05D009317 3.5e-31 139.4 264 39.4
Lsat_1_v5_gn_6_59420 Lactuca sativa HOM05D007349 ORTHO05D009317 2.2e-30 136.7 239 39.7
Hund19205 Selenicereus undatus HOM05D007349 ORTHO05D009317 2.5e-29 133.3 236 38.6
TAR103G0001 Trochodendron aralioides HOM05D007349 ORTHO05D009317 1.2e-28 131.0 81 69.1
THA.LOC104808722 Tarenaya hassleriana HOM05D007349 ORTHO05D009317 4.7e-28 129.0 265 36.2
Ah.13g075780 Amaranthus hybridus HOM05D007349 ORTHO05D009317 8.0e-28 128.3 242 37.6
Nitab4.5_0000676g0280 Nicotiana tabacum HOM05D007349 ORTHO05D009317 3.0e-27 126.3 217 42.9
Aa31LG9G3970 Aethionema arabicum HOM05D007349 ORTHO05D009317 1.2e-26 124.4 268 36.9
ATR0329G016 Amborella trichopoda HOM05D007349 ORTHO05D009317 1.5e-26 124.0 230 40.4
Carub.0007s2878 Capsella rubella HOM05D007349 ORTHO05D009317 8.3e-25 118.2 259 34.7
AT4G13690 Arabidopsis thaliana HOM05D007349 ORTHO05D009317 1.4e-24 117.5 260 36.9
Thhalv10026053m.g Eutrema salsugineum HOM05D007349 ORTHO05D009317 2.4e-24 116.7 263 37.6
Sp7g11450 Schrenkiella parvula HOM05D007349 ORTHO05D009317 2.4e-24 116.7 267 35.2
C04p42240 Brassica napus HOM05D007349 ORTHO05D009317 4.1e-24 115.9 261 36.8
AL7G42820 Arabidopsis lyrata HOM05D007349 ORTHO05D009317 2.0e-23 113.6 260 37.7
BolC4t25802H Brassica oleracea HOM05D007349 ORTHO05D009317 5.9e-23 112.1 259 36.3
Peaxi162Scf00938g00312 Petunia axillaris HOM05D007349 ORTHO05D009317 5.9e-23 112.1 80 63.8
BcaC02g09398 Brassica carinata HOM05D007349 ORTHO05D009317 7.7e-23 111.7 265 35.5
ECA248G1485 Erigeron canadensis HOM05D007349 ORTHO05D009317 1.3e-22 110.9 244 34.0
vmacro00487 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.7e-22 110.5 193 38.3
MSTRG.21955 Avicennia marina HOM05D007349 ORTHO05D009317 3.8e-22 109.4 119 49.6
AUR62012020 Chenopodium quinoa HOM05D007349 ORTHO05D009317 5.0e-22 109.0 210 37.6
Glyma.20G197951 Glycine max HOM05D007349 ORTHO05D009317 5.0e-22 109.0 84 67.9
A04p08500 Brassica napus HOM05D007349 ORTHO05D009317 6.6e-22 108.6 257 37.0
Dinv29577 Davidia involucrata HOM05D007349 ORTHO05D009317 1.1e-21 107.8 127 48.8
Sopen12g033040 Solanum pennellii HOM05D007349 ORTHO05D009317 1.9e-21 107.1 78 62.8
BcaB03g16060 Brassica carinata HOM05D007349 ORTHO05D009317 2.5e-21 106.7 257 35.8
Actinidia33026 Actinidia chinensis HOM05D007349 ORTHO05D009317 5.6e-21 105.5 160 46.2
Solyc12g098220.2 Solanum lycopersicum HOM05D007349 ORTHO05D009317 7.3e-21 105.1 78 61.5
SGA_v2.0_scaffold31G12592 Striga asiatica HOM05D007349 ORTHO05D009317 4.7e-20 102.4 231 33.8
AUR62015355 Chenopodium quinoa HOM05D007349 ORTHO05D009317 6.1e-20 102.1 126 44.4
BraA04t16541Z Brassica rapa HOM05D007349 ORTHO05D009317 1.8e-19 100.5 255 35.3
unitig_8.g4490 Utricularia gibba HOM05D007349 ORTHO05D009317 5.4e-16 89.0 172 31.4
Zm00001eb046010 Zea mays HOM05D007349 ORTHO05D009317 2.0e-15 87.0 169 33.1
PSO832G0714 Papaver somniferum HOM05D007349 ORTHO05D009317 1.3e-14 84.3 202 35.6
TAR636G1730 Trochodendron aralioides HOM05D007349 ORTHO05D009317 4.3e-13 79.3 41 78.0
SHI01057 Sapria himalayana HOM05D007349 ORTHO05D009317 4.7e-12 75.9 90 46.7
Glyma.20G197900 Glycine max HOM05D007349 ORTHO05D009317 6.8e-11 72.0 151 41.7
Pp3c2_23160 Physcomitrium patens HOM05D007349 ORTHO05D009317 3.5e-07 59.7 75 45.3
Medtr6g023085 Medicago truncatula HOM05D007349 ORTHO05D009317 7.8e-07 58.5 102 41.2
Sopen00g011340 Solanum pennellii HOM05D007349 ORTHO05D009317 7.8e-07 58.5 143 38.5
Peaxi162Scf00938g00313 Petunia axillaris HOM05D007349 ORTHO05D009317 1.7e-06 57.4 144 37.5


User provided reference genes

Program Settings