Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 2012.3 1010 100.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1912.1 1077 91.3
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1731.8 1014 85.7
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1696.4 1015 84.5
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1557.0 1015 76.9
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1555.4 1016 76.4
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1552.7 1014 77.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1548.9 1015 76.6
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1541.9 992 78.3
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1538.1 1014 76.7
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1536.2 1016 76.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1535.8 1015 75.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1535.8 1020 76.7
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1526.9 1014 76.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1520.4 1017 75.1
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1518.4 1009 76.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1517.7 1015 75.8
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1515.4 1009 76.5
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1501.9 1018 75.1
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1499.6 1011 74.9
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1489.6 1013 73.1
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1480.3 1017 73.2
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1478.8 1016 73.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1477.6 1015 72.9
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1469.1 990 74.7
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1466.4 1004 73.4
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1459.5 1022 72.6
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1458.4 1022 72.3
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1456.8 1077 69.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1455.7 1017 72.8
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1447.6 1015 71.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1447.2 1017 72.7
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1438.7 1018 70.5
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1429.8 1018 70.8
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1425.2 1018 69.8
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1422.9 1015 69.8
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1422.1 1017 70.0
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1421.4 1015 69.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1411.4 1065 68.5
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1398.3 1018 68.9
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1393.6 1011 69.7
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1387.5 1017 68.5
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1386.3 1016 69.4
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1384.0 1036 68.4
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1378.2 1015 68.6
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1373.2 996 69.3
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1357.8 1015 66.8
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1353.2 1023 67.4
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1352.4 1018 67.4
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1346.3 1018 67.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1336.6 1018 66.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1335.5 1017 66.9
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1334.3 1016 67.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1332.4 1014 66.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1326.6 1018 65.2
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1315.8 1016 64.9
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1315.1 1021 65.9
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1311.2 1011 66.1
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1310.8 1020 64.8
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1308.5 1019 65.0
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1305.0 1018 64.5
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1303.9 1018 63.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1303.1 1018 64.7
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1294.3 1014 65.1
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1288.1 1018 63.7
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1287.3 1016 64.6
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1286.6 1018 63.8
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1286.6 1018 63.8
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1285.8 1018 63.8
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1285.8 1014 64.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1284.6 1018 63.7
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1274.6 1014 65.4
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1272.3 1027 63.1
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1265.4 1009 64.5
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1259.2 1010 64.7
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1256.9 776 80.0
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1253.8 1017 63.7
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1246.1 1023 64.0
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1237.6 1014 62.5
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1014 61.7
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1203.0 775 77.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1171.8 985 62.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1149.4 796 73.0
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1132.5 1019 58.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1085.5 1021 55.4
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.3e-308 1063.1 1020 55.2
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 4.4e-293 1011.5 695 72.4
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 6.4e-292 1007.7 758 66.1
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 7.4e-280 967.6 594 80.1
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.7e-279 965.3 610 77.0
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-278 963.4 985 53.0
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-249 866.3 1034 47.3
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 7.4e-248 861.3 777 56.8
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-245 854.0 1036 46.8
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 4.5e-245 852.0 995 47.7
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.9e-244 849.4 869 51.1
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.8e-225 785.0 1010 45.0
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 4.8e-223 778.9 553 70.5
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 8.9e-209 731.5 504 71.0
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 9.2e-206 721.5 544 67.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 7.3e-203 711.8 453 79.5
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 9.5e-195 684.9 431 79.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 8.3e-191 671.8 420 80.2
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 2.6e-184 650.2 1056 39.1
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.6e-181 641.0 528 63.6
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-178 631.3 515 61.9
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.6e-178 629.8 572 59.1
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 5.3e-177 625.9 1031 37.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.4e-166 591.3 515 58.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.0e-164 585.1 462 62.1
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 6.2e-154 549.3 1021 34.5
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-148 531.6 638 46.4
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.6e-120 438.3 530 48.3
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.5e-119 432.6 534 45.3
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-113 415.2 297 68.0
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 3.1e-113 414.1 1086 29.1
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.0e-111 406.8 237 84.4
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.1e-105 389.0 266 75.2
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.8e-100 371.7 237 79.3
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 3.1e-84 317.8 336 50.0
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.7e-82 310.8 321 50.2
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 3.7e-82 310.8 451 42.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.5e-80 304.3 322 49.7
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.2e-58 231.9 403 41.9
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 5.6e-54 217.2 392 37.8
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-53 215.3 414 36.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 1.3e-45 189.5 109 85.3
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.1e-45 188.7 166 62.0
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.1e-45 188.7 166 62.0
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 8.4e-42 176.8 415 33.0
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.2e-41 174.9 424 32.8
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.7e-40 171.8 754 26.9
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.3e-38 164.9 228 44.3
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.3e-38 164.5 818 24.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-36 158.7 315 35.9
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-33 149.1 432 30.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 3.5e-32 144.8 756 24.3
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 4.3e-30 137.9 109 67.9
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-29 136.3 161 47.2
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 5.3e-28 131.0 159 46.5
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.6e-27 128.6 117 62.4
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 5.0e-26 124.4 174 41.4
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.9e-24 117.1 76 71.1
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 2.3e-23 115.5 76 78.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 1.8e-20 105.9 166 36.7
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 9.1e-20 103.6 89 56.2
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-17 94.7 195 38.5
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 6.1e-16 90.9 446 23.1
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 3.3e-14 85.1 51 72.5
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 9.7e-14 83.6 61 72.1
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.0e-12 77.4 49 69.4
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.2e-11 76.6 46 78.3
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 3.8e-10 71.6 107 36.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.6e-08 66.2 67 53.7
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 1.5e-06 59.7 104 40.4


User provided reference genes

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