Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 5.0e-117 424.5 219 100.0
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 6.4e-72 274.6 183 82.0
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.6e-67 260.0 184 78.3
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 4.5e-57 225.3 208 60.1
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 5.0e-56 221.9 215 60.5
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.5e-55 219.5 225 56.0
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.6e-51 206.8 199 59.3
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 6.3e-51 204.9 180 64.4
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 1.4e-50 203.8 192 61.5
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.8e-50 203.4 180 63.3
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 5.3e-50 201.8 189 60.3
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 5.9e-49 198.4 203 58.1
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.9e-48 196.1 188 59.6
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 3.8e-48 195.7 185 60.5
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 1.9e-47 193.4 177 63.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 3.2e-47 192.6 188 59.0
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 3.2e-47 192.6 165 66.1
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 5.5e-47 191.8 188 59.0
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 7.2e-47 191.4 185 57.8
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.1e-46 189.9 188 58.5
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.0e-45 187.6 179 60.3
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 3.9e-45 185.7 184 59.2
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 8.8e-45 184.5 181 59.7
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.1e-44 184.1 207 52.7
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 1.5e-44 183.7 214 51.4
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 2.0e-44 183.3 186 58.6
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 5.7e-44 181.8 180 58.3
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 5.7e-44 181.8 195 54.9
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.2e-43 179.9 186 55.9
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.8e-43 179.5 185 56.8
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 3.7e-43 179.1 212 52.4
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 4.8e-43 178.7 180 57.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 4.8e-43 178.7 186 57.5
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 8.2e-43 177.9 180 55.0
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 1.5e-41 173.7 186 54.3
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.5e-41 173.7 191 56.5
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 2.6e-41 172.9 228 45.6
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 7.7e-41 171.4 184 56.0
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.0e-40 171.0 209 48.8
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.0e-40 171.0 179 57.0
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.3e-40 170.6 181 54.7
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.7e-40 170.2 198 52.0
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 2.2e-40 169.9 177 55.4
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.9e-40 169.5 237 45.1
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 6.5e-40 168.3 193 53.4
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 8.5e-40 167.9 183 56.3
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.1e-39 167.5 210 47.1
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.9e-39 166.8 175 57.7
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 4.2e-39 165.6 142 60.6
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 4.2e-39 165.6 175 57.1
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 5.5e-39 165.2 182 54.9
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 7.2e-39 164.9 200 50.0
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 7.2e-39 164.9 181 51.4
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 9.4e-39 164.5 195 49.7
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.6e-38 163.7 195 49.2
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 3.6e-38 162.5 182 53.3
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 7.9e-38 161.4 181 54.1
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 7.9e-38 161.4 187 52.9
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 2.3e-37 159.8 206 47.6
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.9e-37 159.1 199 48.2
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 5.2e-37 158.7 200 49.0
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 5.2e-37 158.7 198 49.0
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 5.2e-37 158.7 176 54.0
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 8.8e-37 157.9 200 49.0
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.1e-36 157.5 157 58.0
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 2.0e-36 156.8 209 47.4
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 3.3e-36 156.0 201 47.8
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 4.4e-36 155.6 195 48.2
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 4.4e-36 155.6 137 64.2
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 9.7e-36 154.5 205 45.4
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.7e-35 153.7 236 43.2
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 6.3e-35 151.8 202 46.5
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.1e-34 151.0 224 45.5
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.2e-33 147.5 213 45.1
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.2e-33 147.5 133 62.4
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 2.6e-33 146.4 224 43.8
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 7.7e-33 144.8 177 51.4
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 1.3e-32 144.1 173 48.0
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 2.2e-32 143.3 224 43.8
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 6.5e-32 141.7 181 47.5
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 8.5e-32 141.4 148 56.8
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 3.2e-31 139.4 221 43.4
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 4.2e-31 139.0 289 35.3
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 9.4e-31 137.9 203 45.8
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.4e-29 134.0 122 55.7
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.4e-29 134.0 122 55.7
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.8e-29 133.7 118 62.7
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 2.3e-29 133.3 130 60.0
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 3.0e-29 132.9 175 48.0
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 2.6e-28 129.8 185 41.6
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.8e-27 126.3 143 55.2
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 3.7e-27 125.9 135 51.9
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.0e-24 117.9 263 35.0
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 3.8e-24 115.9 186 40.9
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 5.4e-18 95.5 201 34.8
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.0e-17 93.6 129 42.6
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.7e-16 90.5 152 42.1
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.1e-15 87.8 135 44.4
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.5e-12 77.4 83 51.8
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.7e-11 73.9 87 48.3
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.7e-11 73.9 87 48.3
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 2.7e-09 66.6 191 30.9
Dinv28687 Davidia involucrata HOM05D007204 ORTHO05D008593 5.9e-09 65.5 60 55.0
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 3.8e-08 62.8 116 38.8
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 2.1e-06 57.0 49 57.1


User provided reference genes

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