Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.3e-67 259.6 135 100.0
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 3.1e-48 195.3 129 78.3
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.9e-45 186.0 117 85.5
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 4.1e-45 184.9 117 84.6
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 5.6e-34 147.9 117 67.5
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 9.9e-31 137.1 89 78.7
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 1.7e-30 136.3 122 63.1
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 2.7e-28 129.0 127 55.1
Cfa014115 Carpinus fangiana HOM05D003293 ORTHO05D022248 4.6e-28 128.3 79 82.3
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 7.8e-28 127.5 127 54.3
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.0e-27 127.1 128 51.6
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 3.9e-27 125.2 127 53.5
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 5.1e-27 124.8 126 50.8
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.6e-27 124.4 128 53.1
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 8.7e-27 124.0 128 53.1
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 1.9e-26 122.9 127 52.0
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.3e-26 122.1 128 51.6
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 4.3e-26 121.7 128 52.3
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 9.6e-26 120.6 128 51.6
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 9.6e-26 120.6 126 49.2
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 1.3e-25 120.2 126 49.2
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 3.6e-25 118.6 115 51.3
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 3.6e-25 118.6 115 53.9
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 4.8e-25 118.2 115 50.4
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 4.8e-25 118.2 125 51.2
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 6.2e-25 117.9 125 51.2
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 6.2e-25 117.9 125 51.2
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 6.2e-25 117.9 117 55.6
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 8.1e-25 117.5 125 50.4
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 8.1e-25 117.5 125 48.8
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 8.1e-25 117.5 115 57.4
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.8e-24 116.3 115 53.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 2.4e-24 115.9 115 53.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 4.0e-24 115.2 115 50.4
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 5.3e-24 114.8 125 47.2
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.9e-24 114.4 117 53.8
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.9e-24 114.4 117 53.8
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.9e-24 114.4 117 53.8
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.5e-23 113.2 117 49.6
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 1.5e-23 113.2 125 47.2
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.5e-23 113.2 107 55.1
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 1.5e-23 113.2 117 49.6
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.5e-23 113.2 125 46.4
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 2.6e-23 112.5 123 50.4
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 3.4e-23 112.1 121 48.8
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 4.5e-23 111.7 128 48.4
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.5e-23 111.7 107 52.3
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.5e-23 111.7 107 52.3
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.5e-23 111.7 125 48.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 5.8e-23 111.3 115 48.7
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 5.8e-23 111.3 116 50.9
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 7.6e-23 110.9 115 53.0
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 7.6e-23 110.9 115 48.7
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 9.9e-23 110.5 117 51.3
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.3e-22 110.2 115 49.6
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.3e-22 110.2 125 44.8
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.7e-22 109.8 115 47.8
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.7e-22 109.8 125 43.2
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.9e-22 109.0 115 51.3
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 2.9e-22 109.0 125 44.0
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 3.8e-22 108.6 117 49.6
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 4.9e-22 108.2 128 49.2
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.4e-22 107.8 115 47.0
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 6.4e-22 107.8 115 51.3
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 8.4e-22 107.5 121 47.9
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 8.4e-22 107.5 114 56.1
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 8.4e-22 107.5 115 48.7
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.1e-21 107.1 115 47.8
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 1.4e-21 106.7 125 46.4
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.9e-21 106.3 115 49.6
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 1.9e-21 106.3 115 49.6
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 1.9e-21 106.3 107 49.5
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.9e-21 106.3 115 46.1
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.9e-21 106.3 115 46.1
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 3.2e-21 105.5 117 53.8
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 4.2e-21 105.1 125 44.0
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 5.4e-21 104.8 107 50.5
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 7.1e-21 104.4 128 43.8
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 9.3e-21 104.0 115 48.7
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 9.3e-21 104.0 115 48.7
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.2e-20 103.6 115 47.8
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 1.2e-20 103.6 115 46.1
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.6e-20 103.2 115 47.8
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 1.6e-20 103.2 107 46.7
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.1e-20 102.8 115 47.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 2.1e-20 102.8 122 47.5
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 2.1e-20 102.8 107 45.8
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 2.1e-20 102.8 115 47.0
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.1e-20 102.8 115 49.6
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 3.5e-20 102.1 117 44.4
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 3.5e-20 102.1 105 49.5
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 3.5e-20 102.1 105 49.5
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 3.5e-20 102.1 105 49.5
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 4.6e-20 101.7 125 43.2
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 4.6e-20 101.7 117 46.2
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 4.6e-20 101.7 117 44.4
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 6.0e-20 101.3 128 42.2
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 6.0e-20 101.3 107 44.9
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.3e-19 100.1 115 47.0
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.3e-19 100.1 115 46.1
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 1.8e-19 99.8 115 47.0
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.8e-19 99.8 115 47.8
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 1.8e-19 99.8 107 48.6
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 2.3e-19 99.4 128 43.0
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 49.6
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 2.3e-19 99.4 105 48.6
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.3e-19 99.4 117 47.9
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.0e-19 99.0 115 46.1
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 3.0e-19 99.0 105 51.4
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 3.9e-19 98.6 107 46.7
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 3.9e-19 98.6 105 48.6
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.1e-18 97.1 117 45.3
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.1e-18 97.1 117 47.9
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.1e-18 97.1 122 41.8
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 2.5e-18 95.9 115 47.0
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.3e-18 95.5 107 44.9
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.6e-18 94.7 94 54.3
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 5.6e-18 94.7 105 45.7
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 9.6e-18 94.0 115 44.3
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 9.6e-18 94.0 107 46.7
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 9.6e-18 94.0 123 42.3
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.3e-17 93.6 118 46.6
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 1.3e-17 93.6 108 50.0
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.3e-17 93.6 107 46.7
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.6e-17 93.2 117 47.9
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.6e-17 93.2 92 55.4
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.6e-17 93.2 126 40.5
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 4.8e-17 91.7 100 47.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.2e-17 91.3 115 42.6
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 8.1e-17 90.9 126 40.5
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 8.1e-17 90.9 107 43.9
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.1e-16 90.5 92 46.7
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.1e-16 89.0 107 43.9
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 4.0e-16 88.6 107 45.8
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 5.3e-16 88.2 107 44.9
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.9e-16 87.8 107 44.9
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 9.0e-16 87.4 93 48.4
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.2e-15 87.0 108 43.5
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 5.8e-15 84.7 107 43.9
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 5.8e-15 84.7 86 48.8
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 7.6e-15 84.3 125 40.8
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 2.2e-14 82.8 117 38.5
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 4.9e-14 81.6 83 50.6
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 4.2e-13 78.6 113 42.5
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 5.5e-13 78.2 119 38.7
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 5.5e-13 78.2 110 38.2
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 5.5e-13 78.2 110 40.0
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 9.3e-13 77.4 110 38.2
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.0e-11 72.4 113 39.8
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 1.9e-10 69.7 113 36.3
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 2.5e-10 69.3 120 40.0
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 9.6e-10 67.4 68 48.5
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 9.6e-10 67.4 71 50.7
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.6e-09 66.6 108 36.1
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 2.8e-09 65.9 56 58.9
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 4.8e-09 65.1 124 35.5
VMungo1383G2096 Vigna mungo HOM05D003293 ORTHO05D022256 1.1e-08 63.9 69 49.3
COL.COLO4_09217 Corchorus olitorius HOM05D003293 ORTHO05D022256 4.0e-08 62.0 63 49.2
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 2.6e-07 59.3 60 53.3
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 4.5e-07 58.5 116 35.3
Nitab4.5_0003468g0040 Nicotiana tabacum HOM05D003293 ORTHO05D022256 5.8e-07 58.2 62 43.5


User provided reference genes

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