Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.3e-182 641.7 355 100.0
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.1e-89 334.3 169 97.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 8.3e-77 291.6 167 83.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.3e-71 273.5 165 80.6
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 3.4e-70 269.6 168 75.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.4e-70 269.6 166 75.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.8e-69 266.5 165 75.8
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.3e-69 265.0 166 76.5
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.4e-68 263.5 158 78.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.4e-68 263.5 168 73.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 7.0e-68 261.9 162 75.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.5e-67 259.6 170 72.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 4.5e-67 259.2 168 73.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.9e-67 258.8 163 74.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.9e-67 258.8 168 73.8
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 5.9e-67 258.8 169 73.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.7e-67 258.5 160 78.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.3e-66 257.7 169 72.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.8e-66 256.1 168 73.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 8.6e-66 255.0 168 73.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.9e-65 253.8 169 71.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.5e-65 253.4 169 72.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 5.5e-65 252.3 168 71.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 7.2e-65 251.9 167 71.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.2e-65 251.9 167 71.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.2e-64 251.1 169 71.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.6e-64 250.8 167 70.7
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.1e-64 250.4 169 71.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.1e-64 250.4 156 76.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.1e-64 250.4 156 78.2
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.8e-64 250.0 163 71.2
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.8e-64 250.0 167 70.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.6e-64 249.6 169 71.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 3.6e-64 249.6 170 69.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.7e-64 249.2 167 70.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.7e-64 249.2 171 69.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 4.7e-64 249.2 170 69.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.0e-63 248.1 166 69.9
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.8e-63 247.3 167 69.5
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.3e-63 246.9 165 70.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.0e-63 246.5 168 68.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.0e-63 246.1 169 71.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 4.0e-63 246.1 169 68.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.8e-63 245.4 170 68.2
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 8.9e-63 245.0 168 70.8
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.0e-62 243.8 168 68.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.6e-62 243.4 170 67.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 5.7e-62 242.3 168 67.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.7e-62 242.3 161 70.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 7.5e-62 241.9 154 74.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.3e-61 241.1 161 70.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.3e-61 241.1 165 69.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.7e-61 240.7 168 67.9
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.7e-61 240.7 166 68.7
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.2e-61 240.4 171 67.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.2e-61 240.4 165 70.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 4.9e-61 239.2 161 70.2
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.9e-61 239.2 161 70.2
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 4.9e-61 239.2 158 70.9
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 8.3e-61 238.4 162 68.5
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 8.3e-61 238.4 161 68.3
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 8.3e-61 238.4 160 68.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 8.3e-61 238.4 165 68.5
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.1e-60 238.0 161 69.6
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-60 238.0 161 69.6
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-60 238.0 161 69.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-60 238.0 155 71.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.1e-60 238.0 167 68.9
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.4e-60 237.7 167 70.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-60 237.7 168 69.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.4e-60 237.7 167 68.9
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.8e-60 237.3 163 69.3
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.2e-60 236.5 161 68.3
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.2e-60 236.5 201 60.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.4e-60 235.7 161 67.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.4e-60 235.7 170 64.1
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 7.0e-60 235.3 155 72.3
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 9.2e-60 235.0 159 69.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 9.2e-60 235.0 170 65.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.2e-59 234.6 162 68.5
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.2e-59 234.6 168 67.9
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.7e-59 233.4 162 66.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.7e-59 233.4 165 67.3
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.5e-59 233.0 160 69.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 4.5e-59 232.6 161 67.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 4.5e-59 232.6 161 67.1
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.9e-59 232.3 158 69.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.9e-59 232.3 165 67.3
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 7.8e-59 231.9 165 66.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-58 230.7 155 70.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-58 230.3 165 66.7
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-58 230.3 167 64.1
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.0e-58 229.2 172 61.6
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 8.6e-58 228.4 168 66.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.9e-57 227.3 157 67.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.6e-57 225.7 150 71.3
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.3e-57 225.3 150 70.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 7.3e-57 225.3 167 67.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 9.5e-57 224.9 134 80.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.2e-56 224.6 162 66.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.6e-56 224.2 162 68.5
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.1e-56 223.8 162 65.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.8e-56 223.4 163 66.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.8e-56 223.4 156 69.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.0e-55 221.5 159 67.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.4e-55 221.1 170 62.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.8e-55 220.7 162 64.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.8e-55 220.7 170 64.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 3.1e-55 219.9 140 74.3
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.8e-55 218.8 162 64.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 6.8e-55 218.8 154 68.2
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 8.9e-55 218.4 148 67.6
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.9e-55 218.4 159 65.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.9e-55 218.4 166 65.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.5e-54 217.6 147 69.4
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.0e-54 217.2 157 67.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.6e-54 216.9 148 67.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.4e-54 216.5 155 68.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 9.8e-54 214.9 179 60.3
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-53 214.5 154 62.3
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.4e-52 211.1 147 66.7
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-52 210.7 154 61.7
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.0e-51 207.2 154 61.7
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-51 207.2 154 61.7
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-51 207.2 154 61.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.7e-51 206.8 146 69.2
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 6.0e-51 205.7 178 60.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.8e-51 205.3 151 62.3
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.0e-50 204.9 133 72.2
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.0e-50 204.9 182 58.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.7e-50 204.1 164 62.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.3e-50 203.8 206 52.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 6.6e-50 202.2 154 59.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.5e-49 201.1 143 65.7
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.3e-49 199.9 147 65.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 9.5e-49 198.4 179 58.7
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.8e-48 196.8 147 67.3
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.6e-48 196.4 150 66.7
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 6.2e-48 195.7 146 67.1
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.8e-47 192.2 137 66.4
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-46 191.0 140 65.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.3e-42 177.2 167 56.9
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.5e-41 173.7 123 66.7
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 7.3e-41 172.2 127 66.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.3e-39 167.2 152 53.3
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.0e-38 164.1 148 54.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 6.8e-31 139.0 98 66.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.8e-29 133.3 101 65.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.2e-28 129.8 131 58.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 4.6e-27 126.3 97 69.1
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.5e-22 111.3 153 39.2
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.8e-22 109.4 160 40.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-20 105.1 172 36.6
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-20 104.8 124 43.5
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.0e-18 98.6 79 57.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.2e-16 89.4 80 55.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.0e-15 86.7 124 37.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 5.3e-15 86.3 114 40.4
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.4e-12 78.2 124 34.7
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.6e-11 74.7 117 35.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.8e-10 71.2 77 48.1
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.8e-08 63.9 38 71.1
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.4e-07 60.8 56 50.0
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 5.8e-06 56.2 63 46.0


User provided reference genes

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