Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 7.0e-125 450.7 233 100.0
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 9.5e-114 413.7 233 93.6
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 8.3e-110 400.6 233 90.6
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 5.1e-67 258.5 210 67.1
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.5e-66 256.9 236 65.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 7.9e-60 234.6 184 68.5
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 4.8e-49 198.7 235 52.3
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 5.8e-47 191.8 181 66.9
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.6e-44 182.2 235 50.2
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 5.1e-43 178.7 212 54.7
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.1e-42 177.6 230 48.7
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 3.3e-42 176.0 235 48.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 3.3e-42 176.0 217 48.8
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 1.8e-40 170.2 234 48.3
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.4e-40 169.9 250 45.6
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 6.9e-40 168.3 250 48.4
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 9.0e-40 167.9 228 49.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 4.5e-39 165.6 232 47.8
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 5.9e-39 165.2 231 47.2
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 7.6e-39 164.9 228 49.1
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 6.5e-38 161.8 241 45.6
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.1e-37 161.0 233 48.1
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.9e-37 160.2 243 45.3
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 2.7e-36 156.4 213 47.9
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.7e-36 156.4 226 45.1
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 7.9e-36 154.8 238 44.5
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 7.9e-36 154.8 232 46.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.8e-35 153.7 210 45.7
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 3.9e-35 152.5 195 47.2
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.1e-34 151.0 226 46.0
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 7.4e-34 148.3 243 40.3
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 9.7e-34 147.9 221 46.2
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.7e-33 147.1 240 44.2
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.1e-32 144.4 248 44.4
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 2.4e-32 143.3 231 43.7
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 3.1e-32 142.9 212 45.8
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 3.1e-32 142.9 230 42.6
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.1e-32 142.5 210 44.3
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 5.3e-32 142.1 240 42.9
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.5e-31 140.6 230 43.0
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 7.7e-31 138.3 219 43.4
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.3e-30 137.5 197 44.7
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.3e-30 137.5 230 43.0
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.3e-30 137.5 232 41.8
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 2.2e-30 136.7 227 41.4
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 2.2e-30 136.7 236 41.1
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 5.0e-30 135.6 280 37.1
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.2e-29 132.9 232 40.1
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 5.5e-29 132.1 198 44.9
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 9.4e-29 131.3 226 43.8
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.4e-29 131.3 228 38.6
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 1.2e-28 131.0 220 42.3
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.1e-28 130.2 228 39.5
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 2.7e-28 129.8 231 43.3
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 4.7e-28 129.0 279 38.0
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 4.7e-28 129.0 236 39.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 6.1e-28 128.6 228 37.7
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.1e-28 128.6 228 37.7
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 7.9e-28 128.3 214 40.7
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 1.0e-27 127.9 198 43.4
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.4e-27 127.5 231 42.9
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.8e-27 127.1 242 39.3
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 3.9e-27 125.9 245 39.6
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 6.7e-27 125.2 234 41.0
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 6.7e-27 125.2 204 42.6
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.5e-26 124.0 231 40.3
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.6e-26 123.2 230 39.6
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 7.4e-26 121.7 234 40.2
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.7e-25 120.6 232 39.7
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.7e-25 120.6 149 45.0
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.2e-25 120.2 229 40.2
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.2e-25 120.2 228 39.5
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.8e-25 119.8 230 37.4
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 4.8e-25 119.0 225 38.7
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 8.2e-25 118.2 235 37.4
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.4e-24 117.5 220 40.0
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.4e-24 116.7 164 46.3
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 3.1e-24 116.3 243 35.4
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 6.9e-24 115.2 177 44.6
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.2e-23 114.4 236 38.1
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 1.5e-23 114.0 223 35.9
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.4e-23 112.8 225 38.7
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 3.4e-23 112.8 225 34.7
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 4.5e-23 112.5 236 37.7
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 5.9e-23 112.1 221 40.3
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 1.3e-22 110.9 235 39.1
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 2.2e-22 110.2 228 38.2
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 2.9e-22 109.8 182 42.3
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 3.8e-22 109.4 228 37.7
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 8.5e-22 108.2 222 37.8
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.9e-21 107.1 234 34.6
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 2.5e-21 106.7 226 37.2
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 3.2e-21 106.3 227 36.6
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 4.2e-21 105.9 190 37.4
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 7.2e-21 105.1 226 36.3
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 9.4e-21 104.8 226 36.3
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 9.4e-21 104.8 172 41.3
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.2e-20 104.4 191 37.2
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.6e-20 104.0 237 36.3
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 2.7e-20 103.2 226 36.3
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 2.7e-20 103.2 231 37.2
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 6.1e-20 102.1 196 37.2
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 3.9e-19 99.4 163 41.1
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 5.2e-19 99.0 184 41.8
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.5e-18 97.4 219 36.5
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 1.5e-18 97.4 138 40.6
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.6e-18 96.7 157 37.6
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 3.3e-18 96.3 227 37.0
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 5.7e-18 95.5 220 35.9
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.7e-17 92.8 99 51.5
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 4.8e-17 92.4 224 33.5
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 4.8e-17 92.4 230 33.9
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.0e-14 84.7 192 33.9
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.9e-13 80.5 229 32.3
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.7e-12 76.6 155 36.8
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.4e-11 74.3 174 36.2
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.4e-11 74.3 172 37.2
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 4.0e-11 72.8 177 33.9
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 6.7e-11 72.0 69 50.7
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.8e-08 63.9 153 37.3
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 3.1e-08 63.2 183 31.7
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 1.6e-07 60.8 79 43.0
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 2.7e-07 60.1 112 35.7
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 5.9e-07 58.9 233 27.0
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 8.5e-06 55.1 103 38.8


User provided reference genes

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