Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.6e-103 379.4 183 100.0
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.1e-100 369.0 183 96.2
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 8.3e-89 330.5 183 84.7
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 4.1e-88 328.2 182 85.2
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 3.3e-85 318.5 184 81.0
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 9.2e-80 300.4 183 76.5
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.0e-79 299.3 185 75.1
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 2.0e-79 299.3 184 76.1
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.7e-79 298.9 184 75.5
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.7e-79 298.9 184 75.5
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 3.5e-79 298.5 184 75.5
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 3.5e-79 298.5 178 75.3
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 3.5e-79 298.5 183 76.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 4.5e-79 298.1 185 76.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 7.8e-79 297.4 185 74.6
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 7.8e-79 297.4 183 72.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.3e-78 295.8 182 74.2
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.9e-78 295.4 182 73.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.8e-78 295.0 181 75.7
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 3.8e-78 295.0 182 73.6
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 8.6e-78 293.9 180 74.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.1e-77 293.5 182 72.0
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.5e-77 293.1 184 75.0
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-77 292.7 184 75.0
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.9e-77 292.7 185 74.1
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.6e-77 291.2 183 73.8
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 2.1e-76 289.3 180 74.4
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.8e-76 288.9 185 73.0
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.6e-76 288.5 177 74.6
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.4e-75 286.6 184 70.1
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.8e-75 286.2 183 71.6
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.0e-75 285.0 183 73.2
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.8e-75 284.3 177 75.1
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 6.8e-75 284.3 177 75.1
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 6.8e-75 284.3 180 73.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 8.9e-75 283.9 185 71.4
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.5e-74 283.1 177 74.6
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.5e-74 283.1 177 74.0
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.3e-73 280.0 180 71.7
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.3e-73 280.0 177 71.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 2.2e-73 279.3 179 72.6
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.9e-73 278.9 183 69.4
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 3.7e-73 278.5 178 72.5
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 4.9e-73 278.1 179 71.5
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 4.9e-73 278.1 174 73.0
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 6.4e-73 277.7 179 70.9
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.4e-72 276.6 188 69.7
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 2.4e-72 275.8 183 69.4
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 3.2e-72 275.4 184 72.8
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 4.1e-72 275.0 173 73.4
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 4.1e-72 275.0 172 73.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 4.1e-72 275.0 182 69.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 5.4e-72 274.6 183 69.4
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 5.4e-72 274.6 180 68.9
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 5.4e-72 274.6 183 67.8
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 5.4e-72 274.6 177 71.8
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 7.0e-72 274.2 183 67.8
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.2e-71 273.5 176 71.0
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 2.0e-71 272.7 179 70.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 4.6e-71 271.6 180 70.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.3e-70 270.0 178 70.8
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.7e-70 269.6 176 67.6
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 1.7e-70 269.6 180 70.6
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.3e-70 269.2 183 68.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.9e-70 268.5 176 68.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.9e-70 268.5 176 73.3
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.9e-70 268.5 176 71.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.0e-70 268.1 183 67.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 8.6e-70 267.3 183 68.3
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 4.3e-69 265.0 180 68.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.6e-69 264.6 171 70.2
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 4.7e-68 261.5 179 68.7
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.1e-67 260.4 177 68.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.8e-67 259.6 177 68.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 5.2e-67 258.1 175 66.3
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 8.9e-67 257.3 165 70.9
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 8.9e-67 257.3 155 75.5
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.0e-66 256.1 181 64.1
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 3.4e-66 255.4 181 64.1
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 4.4e-66 255.0 166 71.7
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.4e-66 255.0 166 71.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 4.4e-66 255.0 180 65.0
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 9.8e-66 253.8 179 64.2
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.3e-65 253.4 151 78.1
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.7e-65 253.1 178 66.3
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 6.4e-65 251.1 179 65.9
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 8.3e-65 250.8 185 65.4
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-64 250.4 155 73.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 3.2e-64 248.8 176 67.0
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 9.2e-64 247.3 156 72.4
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 2.0e-63 246.1 179 64.2
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 7.8e-63 244.2 180 61.1
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 7.8e-63 244.2 180 61.1
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 5.0e-62 241.5 171 65.5
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 3.3e-61 238.8 165 67.9
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.3e-61 238.4 149 73.2
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 3.6e-60 235.3 176 61.4
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.7e-60 235.0 172 59.9
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 6.2e-60 234.6 177 65.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-59 233.4 152 73.0
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.4e-59 233.4 177 58.2
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 5.8e-58 228.0 165 62.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 6.0e-55 218.0 172 58.7
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.6e-52 209.9 158 60.1
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.4e-48 194.9 129 65.9
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.6e-47 193.4 177 49.7
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.5e-45 186.0 186 47.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 4.3e-45 185.3 175 48.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.1e-43 179.1 125 64.8
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.6e-42 176.0 181 45.9
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.9e-40 169.9 115 67.0
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.6e-34 149.4 175 42.9
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.4e-34 149.1 131 58.0
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 4.5e-26 122.1 75 78.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 2.1e-23 113.2 151 41.7
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 2.6e-18 96.3 173 32.4
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 2.5e-16 89.7 182 36.3
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 7.1e-16 88.2 59 59.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.0e-14 84.3 97 46.4
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 9.4e-08 61.2 67 49.3


User provided reference genes

Program Settings