Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.2e-170 600.9 289 100.0
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 1.3e-133 479.9 340 73.5
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 6.2e-123 444.5 256 85.5
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 9.0e-98 360.9 256 73.4
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.2e-79 298.1 287 58.9
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.7e-75 287.0 225 68.0
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.7e-62 243.0 232 55.6
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 3.1e-50 203.0 221 48.0
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 1.6e-49 200.7 232 49.6
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 7.7e-49 198.4 229 47.6
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 2.9e-48 196.4 239 45.6
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.2e-46 191.0 225 46.7
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 1.6e-46 190.7 202 48.0
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 4.7e-46 189.1 222 48.6
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 6.1e-46 188.7 229 46.7
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 1.0e-45 188.0 162 57.4
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 3.0e-45 186.4 223 47.1
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 5.9e-41 172.2 224 43.8
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 1.0e-40 171.4 182 51.6
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 3.9e-40 169.5 171 49.1
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 5.0e-40 169.1 230 42.6
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 1.1e-39 167.9 175 52.0
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-38 164.1 183 48.1
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.8e-38 163.3 157 52.2
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 3.6e-38 162.9 205 45.4
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 6.1e-38 162.2 231 42.0
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 9.8e-36 154.8 198 41.4
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 4.9e-35 152.5 231 42.0
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 8.3e-35 151.8 149 53.0
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 1.2e-30 137.9 221 36.7
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 1.8e-29 134.0 204 32.8
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 2.3e-29 133.7 194 35.1
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 4.0e-29 132.9 173 40.5
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 5.2e-29 132.5 191 43.5
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-27 127.1 183 39.3
CiPaw.16G076400 Carya illinoinensis HOM05D000005 ORTHO05D010574 1.1e-26 124.8 172 44.8
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 5.4e-26 122.5 172 34.9
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 4.6e-25 119.4 172 39.5
CANSAT78G2183 Cannabis sativa HOM05D000005 ORTHO05D010574 2.3e-24 117.1 179 39.7
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 1.9e-23 114.0 207 33.8
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.6e-22 109.8 190 35.8
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 8.1e-22 108.6 201 35.3
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.4e-21 107.8 190 34.7
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 1.4e-21 107.8 191 35.6
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 3.1e-21 106.7 167 33.5
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.0e-21 106.3 191 35.6
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 8.9e-21 105.1 190 35.3
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 8.9e-21 105.1 190 35.3
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.4e-20 103.2 190 35.3
FAN28G2233 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.4e-20 102.8 216 32.9
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 9.9e-20 101.7 191 34.0
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 2.9e-19 100.1 190 34.2
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 8.3e-19 98.6 213 31.5
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.4e-18 97.1 150 38.0
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 6.0e-17 92.4 153 30.7
Sed0026450 Sechium edule HOM05D000005 ORTHO05D014598 1.0e-16 91.7 133 36.1
Cfa018274 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.1e-16 89.4 82 52.4
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 1.5e-15 87.8 149 30.9
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 7.3e-15 85.5 205 25.4
FAN28G0065 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-14 84.7 203 31.0
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-14 84.7 169 34.3
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 2.8e-14 83.6 141 31.9
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 8.1e-14 82.0 187 29.9
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 3.1e-13 80.1 141 30.5
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 4.0e-13 79.7 219 27.9
QL09p003562 Quercus lobata HOM05D000005 ORTHO05D000012 5.2e-13 79.3 226 27.4
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 6.8e-13 79.0 146 28.1
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 8.9e-13 78.6 192 28.1
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 2.6e-12 77.0 231 26.8
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 4.4e-12 76.3 151 35.1
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 5.8e-12 75.9 143 29.4
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.9e-12 75.1 207 23.7
Prupe.8G005500 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-11 73.9 204 29.4
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 2.9e-11 73.6 186 27.4
FAN18G3744 Fragaria x ananassa HOM05D000005 ORTHO05D012870 8.4e-11 72.0 153 26.8
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 1.4e-10 71.2 156 23.7
FvH4_5g38500 Fragaria vesca HOM05D000005 ORTHO05D012870 1.9e-10 70.9 156 26.9
FvH4_5g38540 Fragaria vesca HOM05D000005 ORTHO05D012870 2.4e-10 70.5 143 32.2
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 2.4e-10 70.5 108 35.2
FvH4_1g16621 Fragaria vesca HOM05D000005 ORTHO05D012233 3.2e-10 70.1 84 41.7
FvH4_2g02050 Fragaria vesca HOM05D000005 ORTHO05D000012 4.2e-10 69.7 151 31.8
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-10 69.7 151 31.1
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 4.2e-10 69.7 168 29.2
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 5.4e-10 69.3 180 28.9
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 7.1e-10 68.9 172 27.9
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 7.1e-10 68.9 184 26.1
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.3e-10 68.6 152 28.9
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 1.2e-09 68.2 150 29.3
FvH4_5g38630 Fragaria vesca HOM05D000005 ORTHO05D012870 1.2e-09 68.2 160 31.2
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 2.1e-09 67.4 223 28.3
QL03p060940 Quercus lobata HOM05D000005 ORTHO05D000012 4.6e-09 66.2 185 28.1
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-09 66.2 173 27.2
QL03p060869 Quercus lobata HOM05D000005 ORTHO05D000012 6.0e-09 65.9 165 29.1
QL04p028127 Quercus lobata HOM05D000005 ORTHO05D010574 6.0e-09 65.9 72 38.9
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 7.8e-09 65.5 183 26.2
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 7.8e-09 65.5 178 26.4
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.0e-08 65.1 156 30.8
FvH4_5g38760 Fragaria vesca HOM05D000005 ORTHO05D012870 1.0e-08 65.1 178 24.7
FAN18G3157 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-08 65.1 164 28.7
RcHm_v2.0_Chr1g0322701 Rosa chinensis HOM05D000005 ORTHO05D001748 1.0e-08 65.1 161 29.2
FAN04G2291 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-08 64.3 161 27.3
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-08 64.3 173 25.4
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-08 64.3 173 27.2
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-08 63.9 173 27.2
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 2.3e-08 63.9 173 26.6
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-08 63.9 170 24.1
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 3.9e-08 63.2 173 27.2
QL09p004704 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-08 62.8 164 26.8
FvH4_5g38561 Fragaria vesca HOM05D000005 ORTHO05D000012 6.6e-08 62.4 160 27.5
QL09p003532 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-07 61.6 171 28.7
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 1.1e-07 61.6 167 24.6
MD07G1123900 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-07 61.2 172 26.7
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-07 61.2 167 24.6
Prupe.8G005600 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-07 60.8 150 26.7
QL04p027649 Quercus lobata HOM05D000005 ORTHO05D010574 1.9e-07 60.8 155 27.7
Sed0004955 Sechium edule HOM05D000005 ORTHO05D019022 1.9e-07 60.8 165 26.1
QL05p082235 Quercus lobata HOM05D054300 ORTHO05D010574 3.3e-07 60.1 137 37.2
RcHm_v2.0_Chr1g0322041 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-07 60.1 173 25.4
FAN05G1394 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.3e-07 59.7 155 25.8
Prupe.8G005200 Prunus persica HOM05D000005 ORTHO05D000012 5.6e-07 59.3 159 25.8
FvH4_3g33030 Fragaria vesca HOM05D000005 ORTHO05D000012 7.3e-07 58.9 182 29.1
FAN13G2383 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.3e-07 58.9 143 28.0
RcHm_v2.0_Chr6g0250771 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-07 58.9 154 29.9
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 9.6e-07 58.5 148 27.7
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 9.6e-07 58.5 152 29.6
FvH4_6g05610 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-06 58.2 163 25.8
Gohir.D11G312054 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-06 58.2 190 27.4
Manes.02G199800 Manihot esculenta HOM05D000005 ORTHO05D000012 1.3e-06 58.2 160 26.2
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-06 58.2 146 29.5
Prupe.7G065500 Prunus persica HOM05D000005 ORTHO05D010574 1.6e-06 57.8 151 33.1
Prupe.8G005100 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-06 57.8 157 29.3
RcHm_v2.0_Chr7g0240681 Rosa chinensis HOM05D000005 ORTHO05D012870 1.6e-06 57.8 184 26.6
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-06 57.0 199 24.1
MD10G1006400 Malus domestica HOM05D000005 ORTHO05D000012 4.8e-06 56.2 159 25.2
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-06 56.2 146 29.5
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-06 56.2 146 29.5
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 4.8e-06 56.2 174 23.0
FAN04G0619 Fragaria x ananassa HOM05D000005 ORTHO05D001748 6.2e-06 55.8 149 26.2
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.2e-06 55.8 156 27.6
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 6.2e-06 55.8 188 21.8
TWI38G0566 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 6.2e-06 55.8 145 26.2


User provided reference genes

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