Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011608 Carpinus fangiana HOM05D025629 ORTHO05D017484 1.9e-101 372.5 188 100.0
Sc24g0002800 Simmondsia chinensis HOM05D000029 ORTHO05D000854 7.3e-16 88.2 115 45.2
TWI77G0318 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 9.9e-13 77.8 62 62.9
Lsat_1_v5_gn_2_133840 Lactuca sativa HOM05D025629 ORTHO05D017484 3.2e-11 72.8 67 52.2
MBI06_g35672_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 7.1e-11 71.6 73 50.7
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.7e-10 69.7 133 36.8
AagrBONN_evm.TU.Sc2ySwM_117.2213 Anthoceros agrestis HOM05D013037 ORTHO05D017308 4.6e-10 68.9 128 35.9
Haze_12930 Corylus avellana HOM05D013352 ORTHO05D013588 4.6e-10 68.9 123 38.2
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 4.6e-10 68.9 133 36.8
CARHR158740 Cardamine hirsuta HOM05D000029 ORTHO05D000854 7.9e-10 68.2 53 60.4
Cfa021152 Carpinus fangiana HOM05D025629 ORTHO05D017484 7.9e-10 68.2 47 68.1
SHI12114 Sapria himalayana HOM05D000029 ORTHO05D000854 1.3e-09 67.4 59 57.6
CAN.G564.13 Capsicum annuum HOM05D000053 ORTHO05D000035 2.3e-09 66.6 136 35.3
ClCG10G008110 Citrullus lanatus HOM05D000029 ORTHO05D000854 2.3e-09 66.6 64 54.7
Oeu061522.1 Olea europaea HOM05D000029 ORTHO05D000854 1.1e-08 64.3 46 60.9
Nn4g24417 Nelumbo nucifera HOM05D000132 ORTHO05D000058 1.5e-08 63.9 127 33.9
BcaB08g34403 Brassica carinata HOM05D000094 ORTHO05D032433 2.5e-08 63.2 101 35.6
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.3e-08 62.8 129 38.0
TWI14G1242 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 4.3e-08 62.4 119 38.7
DCAR_014030 Daucus carota HOM05D000029 ORTHO05D008832 5.6e-08 62.0 90 42.2
Gohir.A01G054900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.4e-08 61.6 117 40.2
RcHm_v2.0_Chr7g0213311 Rosa chinensis HOM05D018904 ORTHO05D016947 7.4e-08 61.6 125 36.0
TAR374G1085 Trochodendron aralioides HOM05D000071 ORTHO05D000029 7.4e-08 61.6 121 34.7
MSTRG.24237 Avicennia marina HOM05D025629 ORTHO05D017484 9.6e-08 61.2 61 47.5
Sopen12g018360 Solanum pennellii HOM05D000053 ORTHO05D000035 9.6e-08 61.2 140 31.4
Potri.003G025800 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.3e-07 60.8 121 34.7
vmacro11597 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.3e-07 60.8 102 43.1
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 2.1e-07 60.1 136 32.4
CDE03G0336 Ceratophyllum demersum HOM05D029111 ORTHO05D017484 2.1e-07 60.1 49 55.1
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 2.1e-07 60.1 45 66.7
arahy.Tifrunner.gnm1.ann1.W5A76M Arachis hypogaea HOM05D000021 ORTHO05D013485 2.8e-07 59.7 134 33.6
CAN.G134.225 Capsicum annuum HOM05D000053 ORTHO05D000035 2.8e-07 59.7 122 38.5
CAN.G575.9 Capsicum annuum HOM05D000053 ORTHO05D000035 2.8e-07 59.7 107 34.6
Nn5g29128 Nelumbo nucifera HOM05D000029 ORTHO05D000854 2.8e-07 59.7 41 65.9
Gohir.A01G049266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.7e-07 59.3 133 34.6
Nitab4.5_0006164g0060 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.7e-07 59.3 127 34.6
Cfa006806 Carpinus fangiana HOM05D000029 ORTHO05D000854 4.8e-07 58.9 43 67.4
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 6.2e-07 58.5 127 32.3
AUR62006447 Chenopodium quinoa HOM05D000166 ORTHO05D001348 6.2e-07 58.5 93 37.6
Eucgr.D00672 Eucalyptus grandis HOM05D000071 ORTHO05D000029 6.2e-07 58.5 134 34.3
SGA_v2.0_scaffold122G33299 Striga asiatica HOM05D000570 ORTHO05D001174 6.2e-07 58.5 111 32.4
CANSAT35G1492 Cannabis sativa HOM05D000054 ORTHO05D000171 8.1e-07 58.2 120 35.8
ECA236G2912 Erigeron canadensis HOM05D002247 ORTHO05D001072 8.1e-07 58.2 121 33.9
MD05G1298300 Malus domestica HOM05D000021 ORTHO05D000010 8.1e-07 58.2 74 43.2
Peaxi162Scf00205g00723 Petunia axillaris HOM05D000021 ORTHO05D012344 8.1e-07 58.2 121 35.5
Potri.001G385750 Populus trichocarpa HOM05D000054 ORTHO05D010247 8.1e-07 58.2 105 34.3
Prupe.2G130600 Prunus persica HOM05D000053 ORTHO05D000035 8.1e-07 58.2 131 34.4
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 8.1e-07 58.2 66 45.5
HPP92_008132 Vanilla planifolia HOM05D000029 ORTHO05D000854 8.1e-07 58.2 58 44.8
EL10Ac4g07576 Beta vulgaris HOM05D000053 ORTHO05D000035 1.1e-06 57.8 135 29.6
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.1e-06 57.8 106 35.8
Ciclev10006412m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.1e-06 57.8 128 35.2
MELO3C020998.2 Cucumis melo HOM05D000033 ORTHO05D007915 1.1e-06 57.8 110 37.3
MBI17_g34868_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 1.1e-06 57.8 103 33.0
BolC2t07713H Brassica oleracea HOM05D004495 ORTHO05D005361 1.4e-06 57.4 132 34.8
FAN05G5579 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.4e-06 57.4 137 29.9
Potri.010G155600 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.4e-06 57.4 104 33.7
SalBow6G3309 Salvia bowleyana HOM05D013660 ORTHO05D014924 1.4e-06 57.4 74 39.2
arahy.Tifrunner.gnm1.ann1.NUM2HH Arachis hypogaea HOM05D000053 ORTHO05D000035 1.8e-06 57.0 134 35.8
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.8e-06 57.0 110 39.1
Thhalv10022048m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 1.8e-06 57.0 111 35.1
FAN23G3125 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.8e-06 57.0 52 51.9
Solyc12g009780.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.8e-06 57.0 127 32.3
TPR.G30029 Trifolium pratense HOM05D000021 ORTHO05D000010 1.8e-06 57.0 114 36.0
BcaB05g22215 Brassica carinata HOM05D004495 ORTHO05D005361 2.4e-06 56.6 108 36.1
C02p16030 Brassica napus HOM05D004495 ORTHO05D005361 2.4e-06 56.6 108 36.1
CiPaw.10G105000 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.4e-06 56.6 135 31.1
MELO3C009142.2 Cucumis melo HOM05D000053 ORTHO05D000448 2.4e-06 56.6 94 38.3
Lj5C12G0 Lonicera japonica HOM05D000053 ORTHO05D000035 2.4e-06 56.6 136 31.6
Peaxi162Scf00434g00743 Petunia axillaris HOM05D000053 ORTHO05D012842 2.4e-06 56.6 124 34.7
Potri.001G437700 Populus trichocarpa HOM05D000053 ORTHO05D000448 2.4e-06 56.6 113 37.2
RcHm_v2.0_Chr4g0403281 Rosa chinensis HOM05D000021 ORTHO05D000010 2.4e-06 56.6 102 42.2
SalBow5G1696 Salvia bowleyana HOM05D000053 ORTHO05D000448 2.4e-06 56.6 104 34.6
SalBow5G2318 Salvia bowleyana HOM05D000053 ORTHO05D000448 2.4e-06 56.6 104 34.6
SalBow5G3751 Salvia bowleyana HOM05D000053 ORTHO05D000448 2.4e-06 56.6 104 34.6
Sed0022739 Sechium edule HOM05D000094 ORTHO05D003883 2.4e-06 56.6 128 32.0
Sopen10g027380 Solanum pennellii HOM05D000166 ORTHO05D001348 2.4e-06 56.6 108 35.2
PGSC0003DMG400015824 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.4e-06 56.6 133 32.3
arahy.Tifrunner.gnm1.ann1.2E2S80 Arachis hypogaea HOM05D000053 ORTHO05D000035 3.1e-06 56.2 133 32.3
EL10Ac5g10719 Beta vulgaris HOM05D049893 ORTHO05D017484 3.1e-06 56.2 120 35.0
Eucgr.E00148 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.1e-06 56.2 131 32.1
Eucgr.E02040 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.1e-06 56.2 123 35.0
Potri.001G400500 Populus trichocarpa HOM05D000053 ORTHO05D000035 3.1e-06 56.2 108 35.2
Prupe.1G575300 Prunus persica HOM05D000071 ORTHO05D000029 3.1e-06 56.2 117 35.9
RcHm_v2.0_Chr2g0114381 Rosa chinensis HOM05D000021 ORTHO05D000010 3.1e-06 56.2 88 38.6
Sabra12G0009100 Salix brachista HOM05D000053 ORTHO05D000035 3.1e-06 56.2 126 35.7
VMungo1309G0082 Vigna mungo HOM05D013660 ORTHO05D014924 3.1e-06 56.2 75 41.3
AL8G43410 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 4.0e-06 55.8 65 46.2
CDE10G0437 Ceratophyllum demersum HOM05D000029 ORTHO05D028700 4.0e-06 55.8 95 33.7
COL.COLO4_24634 Corchorus olitorius HOM05D000029 ORTHO05D006810 4.0e-06 55.8 92 35.9
Migut.I00483 Erythranthe guttata HOM05D001169 ORTHO05D001002 4.0e-06 55.8 124 33.1
Nitab4.5_0000057g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.0e-06 55.8 90 42.2
RcHm_v2.0_Chr5g0042881 Rosa chinensis HOM05D000053 ORTHO05D000035 4.0e-06 55.8 140 32.1
Sed0008173 Sechium edule HOM05D000029 ORTHO05D008567 4.0e-06 55.8 73 46.6
Solyc10g074890.2 Solanum lycopersicum HOM05D000166 ORTHO05D001348 4.0e-06 55.8 92 38.0
TPR.G26944 Trifolium pratense HOM05D000106 ORTHO05D000160 4.0e-06 55.8 98 35.7
Haze_03953 Corylus avellana HOM05D000029 ORTHO05D000854 5.3e-06 55.5 43 60.5
DCAR_021488 Daucus carota HOM05D004495 ORTHO05D005361 5.3e-06 55.5 107 31.8
MD04G1150000 Malus domestica HOM05D000021 ORTHO05D000010 5.3e-06 55.5 114 32.5
MD08G1062100 Malus domestica HOM05D000053 ORTHO05D000448 5.3e-06 55.5 132 31.8
Manes.12G119600 Manihot esculenta HOM05D000029 ORTHO05D000854 5.3e-06 55.5 63 47.6
Prupe.2G169100 Prunus persica HOM05D000071 ORTHO05D000029 5.3e-06 55.5 120 30.8
RcHm_v2.0_Chr2g0113671 Rosa chinensis HOM05D000021 ORTHO05D000010 5.3e-06 55.5 80 38.8
Sabra12G0005000 Salix brachista HOM05D000053 ORTHO05D000035 5.3e-06 55.5 123 36.6
SEGI_16220 Sequoiadendron giganteum HOM05D000071 ORTHO05D011908 5.3e-06 55.5 108 36.1
Aa31LG4G18150 Aethionema arabicum HOM05D000029 ORTHO05D000854 6.9e-06 55.1 63 46.0
arahy.Tifrunner.gnm1.ann1.DNYC70 Arachis hypogaea HOM05D000106 ORTHO05D001887 6.9e-06 55.1 106 32.1
CAN.G866.1 Capsicum annuum HOM05D000021 ORTHO05D000010 6.9e-06 55.1 125 32.8
FAN05G0901 Fragaria x ananassa HOM05D000053 ORTHO05D000448 6.9e-06 55.1 137 29.2
HanXRQChr11g0329901 Helianthus annuus HOM05D000053 ORTHO05D000035 6.9e-06 55.1 85 36.5
Lj5C653T5 Lonicera japonica HOM05D000053 ORTHO05D000448 6.9e-06 55.1 124 33.1
Lalb_Chr01g0023921 Lupinus albus HOM05D000166 ORTHO05D001348 6.9e-06 55.1 96 39.6
Potri.001G385400 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.9e-06 55.1 92 35.9
Potri.001G385600 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.9e-06 55.1 112 33.9
Potri.003G026325 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.9e-06 55.1 113 34.5
QL02p100706 Quercus lobata HOM05D000053 ORTHO05D000035 6.9e-06 55.1 122 35.2
QL09p047793 Quercus lobata HOM05D000053 ORTHO05D000035 6.9e-06 55.1 163 31.3
SalBow5G5507 Salvia bowleyana HOM05D000166 ORTHO05D001348 6.9e-06 55.1 92 37.0
PGSC0003DMG400002937 Solanum tuberosum HOM05D000053 ORTHO05D000035 6.9e-06 55.1 127 32.3
TWI53G0212 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 6.9e-06 55.1 62 46.8
TWI73G0933 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 6.9e-06 55.1 147 32.0
arahy.Tifrunner.gnm1.ann1.JR3XQC Arachis hypogaea HOM05D000053 ORTHO05D000035 9.0e-06 54.7 115 35.7
Ciclev10007014m.g Citrus clementina HOM05D000071 ORTHO05D000029 9.0e-06 54.7 110 37.3
Cc04_g14480 Coffea canephora HOM05D041214 ORTHO05D025128 9.0e-06 54.7 110 34.5
COL.COLO4_13323 Corchorus olitorius HOM05D000053 ORTHO05D000035 9.0e-06 54.7 124 31.5
Duzib147G0869 Durio zibethinus HOM05D000029 ORTHO05D000854 9.0e-06 54.7 46 56.5
Duzib213G1008 Durio zibethinus HOM05D000021 ORTHO05D000010 9.0e-06 54.7 76 40.8
Duzib235G1278 Durio zibethinus HOM05D030446 ORTHO05D014924 9.0e-06 54.7 113 34.5
Gohir.D05G382000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.0e-06 54.7 136 33.1
Lsat_1_v5_gn_7_97561 Lactuca sativa HOM05D000053 ORTHO05D000035 9.0e-06 54.7 87 35.6
Prupe.4G213400 Prunus persica HOM05D000021 ORTHO05D000010 9.0e-06 54.7 134 32.1
QL04p073597 Quercus lobata HOM05D000053 ORTHO05D000035 9.0e-06 54.7 120 34.2
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 9.0e-06 54.7 106 34.9
Solyc12g009510.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 9.0e-06 54.7 127 32.3
Thecc.07G181800 Theobroma cacao HOM05D000021 ORTHO05D000010 9.0e-06 54.7 96 40.6
HPP92_024958 Vanilla planifolia HOM05D067326 ORTHO05D008832 9.0e-06 54.7 62 43.5


User provided reference genes

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