Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 5.2e-193 677.6 343 100.0
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 8.9e-169 597.0 365 87.4
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 4.1e-81 305.8 387 51.9
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.1e-70 271.2 402 47.0
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.0e-68 262.7 378 46.6
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 9.8e-67 258.1 379 46.2
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 3.7e-66 256.1 364 47.8
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.1e-62 244.6 377 44.8
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 9.5e-62 241.5 364 46.2
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.4e-57 227.6 376 42.6
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.3e-55 220.3 356 43.5
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.5e-54 216.9 378 42.1
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 4.3e-54 216.1 423 39.0
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.2e-53 214.5 450 38.4
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 8.0e-53 211.8 354 41.5
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 5.2e-52 209.1 355 42.8
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.7e-50 204.1 375 42.4
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.2e-50 203.8 380 42.4
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.4e-49 201.1 360 43.9
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 2.4e-49 200.3 425 38.1
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.2e-48 198.0 367 41.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 1.7e-47 194.1 356 42.4
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.9e-47 193.0 470 38.5
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 5.0e-47 192.6 350 38.9
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 8.6e-47 191.8 356 41.0
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.9e-46 190.7 451 36.4
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.5e-46 190.3 329 41.6
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.3e-46 189.5 429 37.3
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 5.6e-46 189.1 535 34.6
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 7.3e-46 188.7 443 38.1
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 2.8e-45 186.8 399 37.8
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.8e-44 184.1 387 39.0
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 8.9e-44 181.8 388 39.2
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.2e-43 181.4 378 41.3
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.0e-43 180.6 309 44.3
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 2.6e-43 180.3 403 38.0
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 7.5e-43 178.7 387 39.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 7.5e-43 178.7 391 37.9
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 9.8e-43 178.3 371 39.4
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.7e-42 177.6 409 36.9
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.7e-42 177.6 399 37.3
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.9e-42 176.8 453 39.3
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 3.7e-42 176.4 436 37.8
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 6.4e-42 175.6 444 35.8
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.1e-41 174.9 397 37.8
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.9e-41 174.1 453 39.1
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 4.1e-41 172.9 404 38.6
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 9.2e-41 171.8 470 35.1
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 3.5e-40 169.9 365 37.8
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 6.6e-39 165.6 453 34.0
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 3.3e-38 163.3 480 34.8
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.1e-36 158.3 420 34.5
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.1e-36 156.8 460 35.0
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 4.0e-36 156.4 486 35.8
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 6.8e-36 155.6 386 35.2
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.5e-35 154.5 364 35.7
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.7e-34 151.0 422 33.4
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 2.9e-34 150.2 353 37.4
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 2.9e-34 150.2 453 32.7
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 3.7e-34 149.8 347 37.8
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.1e-33 148.3 425 32.7
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.1e-32 144.1 411 32.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 3.5e-32 143.3 580 30.3
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 4.6e-32 142.9 405 33.3
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 2.5e-30 137.1 377 35.5
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.5e-27 127.9 219 43.4
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 2.0e-27 127.5 236 41.9
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.7e-26 124.4 417 30.5
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.4e-26 122.5 580 28.4
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.4e-25 121.3 552 28.8
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.4e-25 121.3 219 42.0
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 9.3e-25 118.6 422 31.3
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 1.2e-24 118.2 376 33.8
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 3.5e-24 116.7 330 36.1
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 7.8e-24 115.5 451 30.4
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 7.8e-24 115.5 333 31.5
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 1.7e-23 114.4 375 33.3
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.6e-23 112.5 414 31.6
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 6.6e-23 112.5 323 32.8
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.1e-22 111.7 284 33.8
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.5e-22 111.3 292 32.5
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-22 109.8 137 53.3
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 4.3e-22 109.8 137 53.3
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 2.8e-21 107.1 249 36.5
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.8e-20 104.4 378 32.0
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 3.1e-20 103.6 278 36.0
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 4.0e-20 103.2 165 46.1
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 5.3e-20 102.8 398 27.4
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.2e-19 101.7 325 32.6
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.2e-19 101.7 449 30.3
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 1.5e-19 101.3 429 26.1
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 4.4e-19 99.8 439 28.2
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 5.8e-19 99.4 437 26.3
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.7e-18 97.8 426 27.7
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 1.1e-17 95.1 411 27.5
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.1e-17 95.1 407 28.7
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.4e-17 94.7 315 32.1
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.9e-17 94.4 417 26.4
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.9e-17 94.4 143 45.5
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 2.4e-17 94.0 148 41.9
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.2e-17 93.6 154 44.2
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.2e-17 93.6 367 27.0
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 3.2e-17 93.6 94 58.5
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 3.2e-17 93.6 94 58.5
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 4.2e-17 93.2 424 26.7
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 4.2e-17 93.2 382 29.1
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 5.4e-17 92.8 429 25.6
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 9.3e-17 92.0 356 27.0
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 9.3e-17 92.0 356 27.0
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 9.3e-17 92.0 366 28.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.6e-16 91.3 148 41.2
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 2.7e-16 90.5 356 29.8
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.7e-16 90.5 273 32.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 6.0e-16 89.4 413 26.6
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.7e-15 87.8 373 26.8
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 5.1e-15 86.3 314 29.9
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 6.6e-15 85.9 114 50.0
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.5e-14 84.0 282 33.7
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.3e-14 83.2 124 46.0
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 1.6e-13 81.3 399 27.8
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 4.8e-13 79.7 81 53.1
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 3.1e-12 77.0 258 29.5
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.2e-11 75.1 162 39.5
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.5e-11 74.7 162 38.3
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 1.3e-07 61.6 140 35.7
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 1.3e-07 61.6 210 30.0


User provided reference genes

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