Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 7.2e-93 344.0 183 100.0
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 5.0e-62 241.5 182 75.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 8.3e-57 224.2 185 70.8
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 7.1e-56 221.1 174 71.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.7e-55 219.2 187 68.4
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 8.6e-54 214.2 189 66.7
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.6e-52 209.9 185 69.2
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 8.9e-51 204.1 189 64.6
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 8.9e-51 204.1 189 64.0
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.0e-50 203.0 184 66.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.4e-50 202.2 188 66.5
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.4e-50 202.2 188 59.6
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 5.8e-50 201.4 187 64.2
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 9.9e-50 200.7 187 59.4
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.7e-49 199.9 187 63.6
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.7e-49 199.9 187 64.7
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.1e-48 197.2 187 65.2
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.2e-48 195.7 185 67.0
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 3.2e-48 195.7 189 62.4
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 9.2e-48 194.1 188 58.5
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.7e-47 192.6 187 62.6
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.7e-47 192.6 188 61.2
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-47 192.2 185 61.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-47 192.2 185 61.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-47 192.2 185 61.1
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.0e-46 190.7 189 62.4
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.7e-46 189.9 187 58.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.3e-46 189.5 188 60.1
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.1e-45 187.2 187 56.7
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.1e-45 187.2 190 64.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.9e-45 186.4 186 61.3
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 4.3e-45 185.3 188 60.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 7.3e-45 184.5 180 63.9
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.6e-44 183.3 185 60.0
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.6e-44 183.3 189 61.4
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.6e-44 182.2 185 58.9
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 3.6e-44 182.2 187 61.0
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.1e-44 181.0 204 60.8
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 9.0e-43 177.6 188 58.0
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.2e-42 177.2 185 56.8
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.5e-42 176.8 184 56.5
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.6e-42 176.0 191 55.0
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 4.4e-42 175.3 99 94.9
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 9.9e-42 174.1 186 56.5
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 3.8e-41 172.2 183 59.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 4.9e-41 171.8 186 57.0
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 8.4e-41 171.0 186 56.5
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.1e-40 170.6 178 56.2
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 2.4e-40 169.5 188 54.8
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.2e-40 169.1 177 57.6
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 7.1e-40 167.9 178 57.3
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.6e-39 166.8 184 55.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.0e-38 164.1 189 54.0
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.3e-38 163.7 178 55.1
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.6e-38 161.4 176 56.2
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 8.7e-38 161.0 186 53.8
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.1e-37 160.6 184 54.3
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.3e-37 159.1 185 54.1
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 7.3e-37 157.9 186 53.2
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 9.6e-37 157.5 184 57.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.6e-36 155.6 187 51.9
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 8.1e-36 154.5 191 52.9
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.1e-35 154.1 185 51.4
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 1.1e-35 154.1 189 55.0
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.4e-35 153.7 184 51.1
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.8e-35 153.3 181 53.0
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 6.9e-35 151.4 188 52.7
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 6.9e-35 151.4 187 53.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.2e-34 150.6 187 52.9
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 1.5e-34 150.2 187 55.6
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.5e-34 150.2 188 50.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.0e-34 149.8 186 53.8
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 5.8e-34 148.3 181 50.3
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 5.8e-34 148.3 188 52.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 7.6e-34 147.9 184 54.9
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 9.9e-34 147.5 187 54.5
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.7e-33 146.7 187 49.7
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.7e-33 146.7 198 51.0
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 1.7e-33 146.7 184 48.4
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.9e-33 146.0 187 53.5
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 3.8e-33 145.6 185 53.0
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 4.9e-33 145.2 189 52.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 8.4e-33 144.4 188 51.6
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 8.4e-33 144.4 177 53.7
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-32 144.1 177 53.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.4e-32 143.7 187 50.3
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.4e-32 143.7 182 51.6
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 3.2e-32 142.5 190 47.9
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.2e-32 142.1 168 57.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.2e-31 140.6 186 48.4
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.7e-31 139.4 184 48.9
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 7.9e-31 137.9 183 50.8
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.8e-30 136.7 195 49.7
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.7e-30 134.4 168 55.4
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 5.6e-29 131.7 182 47.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.6e-28 130.2 172 47.7
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.6e-28 130.2 187 49.7
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.1e-28 129.8 168 54.2
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 5.3e-27 125.2 186 49.5
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 2.0e-26 123.2 171 50.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.0e-26 123.2 190 45.3
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 3.4e-26 122.5 187 48.7
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-26 122.5 171 50.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-26 122.5 187 48.7
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 3.4e-26 122.5 187 48.7
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 9.9e-26 120.9 187 44.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.2e-25 119.8 189 49.2
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.2e-25 119.8 187 47.6
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.9e-25 119.4 181 45.3
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 3.8e-25 119.0 168 46.4
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 4.2e-24 115.5 201 44.3
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.7e-23 112.8 108 63.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 6.7e-22 108.2 136 50.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.5e-21 107.1 184 45.7
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.9e-21 106.7 224 37.5
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.6e-20 103.6 187 42.2
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.7e-20 102.4 152 46.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.2e-20 101.7 180 41.7
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.4e-19 100.5 180 41.1
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.1e-19 99.4 172 42.4
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 5.3e-19 98.6 75 69.3
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 9.0e-19 97.8 132 45.5
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.6e-18 96.3 152 47.4
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.8e-18 95.1 76 72.4
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.7e-17 93.6 155 44.5
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.2e-17 93.2 175 40.6
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.8e-17 92.4 180 39.4
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 5.5e-16 88.6 169 40.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-15 87.4 183 38.8
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.5e-15 85.9 182 42.3
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.5e-15 85.9 172 40.7
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 3.5e-15 85.9 82 59.8
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.8e-14 83.6 80 60.0
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 2.2e-12 76.6 141 46.1
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 5.3e-11 72.0 140 37.1
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 6.9e-11 71.6 213 35.7
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.2e-09 66.6 83 44.6
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.9e-08 63.5 225 34.7
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 7.2e-08 61.6 187 34.2
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 2.1e-07 60.1 55 61.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 3.6e-07 59.3 106 41.5
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 3.6e-07 59.3 137 38.0
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 1.0e-06 57.8 136 36.0
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 8.8e-06 54.7 52 51.9


User provided reference genes

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