Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.3e-102 377.1 317 100.0
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 1.9e-88 330.1 318 91.8
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 5.8e-74 282.0 196 83.2
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 4.5e-66 255.8 190 75.8
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 5.0e-65 252.3 185 79.5
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 7.2e-64 248.4 204 75.5
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 4.3e-61 239.2 203 71.4
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 9.7e-61 238.0 190 72.6
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 1.6e-60 237.3 187 70.6
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 2.8e-60 236.5 146 78.8
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 6.3e-60 235.3 201 71.1
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 1.1e-59 234.6 180 73.3
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.8e-59 233.8 200 71.5
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 6.9e-59 231.9 177 78.0
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 6.9e-59 231.9 184 74.5
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 2.0e-58 230.3 172 76.2
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 2.0e-58 230.3 146 79.5
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 2.6e-58 229.9 182 74.2
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 7.7e-58 228.4 197 71.1
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 7.7e-58 228.4 180 75.6
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 2.2e-57 226.9 183 73.8
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 3.8e-57 226.1 186 71.0
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 3.8e-57 226.1 184 75.5
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 6.5e-57 225.3 178 74.7
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 6.5e-57 225.3 178 74.7
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 6.5e-57 225.3 178 74.7
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 6.5e-57 225.3 198 62.1
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.1e-56 224.6 174 75.9
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 2.5e-56 223.4 138 80.4
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 3.2e-56 223.0 174 72.4
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 3.2e-56 223.0 198 62.6
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 3.2e-56 223.0 200 66.0
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 5.5e-56 222.2 190 68.4
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 5.5e-56 222.2 131 82.4
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 5.5e-56 222.2 175 74.9
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 9.4e-56 221.5 193 69.9
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.2e-55 221.1 182 72.5
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.1e-55 220.3 182 72.0
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 2.1e-55 220.3 199 67.8
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 2.7e-55 219.9 184 71.7
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 4.6e-55 219.2 190 73.2
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 6.1e-55 218.8 176 64.8
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 6.1e-55 218.8 183 71.0
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 6.1e-55 218.8 178 72.5
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 6.1e-55 218.8 187 70.1
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 6.1e-55 218.8 181 70.7
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 7.9e-55 218.4 178 73.0
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.0e-54 218.0 201 66.7
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.0e-54 218.0 185 69.7
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 1.4e-54 217.6 178 73.0
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.8e-54 217.2 144 74.3
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.3e-54 216.9 184 71.7
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 3.0e-54 216.5 145 75.2
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.0e-54 216.5 186 70.4
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 3.9e-54 216.1 184 71.2
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 5.1e-54 215.7 181 68.5
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 6.7e-54 215.3 177 71.2
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 6.7e-54 215.3 201 64.7
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 1.1e-53 214.5 176 71.0
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.5e-53 214.2 183 72.7
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 3.3e-53 213.0 200 66.5
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 5.7e-53 212.2 147 73.5
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 9.7e-53 211.5 181 70.7
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-52 211.1 142 74.6
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 2.8e-52 209.9 178 71.9
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 3.7e-52 209.5 187 67.9
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 6.3e-52 208.8 181 72.9
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 6.3e-52 208.8 176 68.2
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 8.2e-52 208.4 171 67.3
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 8.2e-52 208.4 184 71.7
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 1.1e-51 208.0 187 69.0
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 1.8e-51 207.2 183 65.6
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 2.4e-51 206.8 177 71.2
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 4.1e-51 206.1 198 65.7
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 5.3e-51 205.7 182 68.7
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 5.3e-51 205.7 177 70.6
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 5.3e-51 205.7 140 72.9
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 9.1e-51 204.9 188 68.6
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 9.1e-51 204.9 198 63.1
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 9.1e-51 204.9 183 66.1
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 1.2e-50 204.5 181 69.1
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.5e-50 204.1 191 58.6
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.5e-50 204.1 186 69.4
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 2.0e-50 203.8 199 64.8
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.6e-50 203.4 192 65.1
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 2.6e-50 203.4 201 62.7
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 3.4e-50 203.0 187 62.6
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 4.5e-50 202.6 177 71.2
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.9e-50 202.2 193 61.7
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 5.9e-50 202.2 191 66.0
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.7e-50 201.8 187 65.2
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 1.0e-49 201.4 177 69.5
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.3e-49 201.1 203 66.0
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 1.7e-49 200.7 194 63.4
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.7e-49 200.7 199 62.8
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 5.0e-49 199.1 174 68.4
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 5.0e-49 199.1 144 72.2
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 1.1e-48 198.0 187 61.0
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.4e-48 197.6 196 59.2
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 1.9e-48 197.2 187 62.0
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 5.5e-48 195.7 172 69.2
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 2.7e-47 193.4 172 70.3
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 2.7e-47 193.4 145 68.3
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 6.1e-47 192.2 172 69.2
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.4e-46 191.0 174 67.2
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 3.0e-46 189.9 186 56.5
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.0e-46 189.9 109 83.5
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.0e-46 189.9 109 83.5
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 8.8e-46 188.3 202 62.4
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 8.8e-46 188.3 172 68.6
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 8.8e-46 188.3 184 67.4
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 2.0e-45 187.2 188 58.0
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 2.6e-45 186.8 172 67.4
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 2.6e-45 186.8 172 67.4
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 2.6e-45 186.8 172 67.4
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 2.6e-45 186.8 184 67.4
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 4.4e-45 186.0 197 57.4
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 5.7e-45 185.7 184 64.1
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 1.8e-43 180.6 172 65.1
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.4e-43 180.3 202 55.4
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 5.3e-43 179.1 184 58.7
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 7.0e-43 178.7 172 67.4
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 2.6e-42 176.8 99 85.9
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 3.5e-42 176.4 184 56.5
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 8.5e-41 171.8 175 64.0
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.5e-40 170.2 176 61.9
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 4.7e-39 166.0 202 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 8.0e-39 165.2 115 70.4
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 8.0e-39 165.2 172 64.0
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 8.0e-39 165.2 172 64.0
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 8.0e-39 165.2 172 64.0
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.0e-38 164.9 161 57.1
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 8.8e-38 161.8 166 63.9
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.2e-37 161.4 131 65.6
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 3.3e-37 159.8 152 61.2
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 9.7e-37 158.3 153 57.5
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.8e-36 156.8 121 67.8
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 3.8e-33 146.4 191 50.3
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 5.0e-33 146.0 122 62.3
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.6e-31 141.0 148 53.4
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.4e-29 133.3 155 50.3
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.7e-28 131.0 202 52.0
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 2.2e-28 130.6 97 70.1
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.6e-26 124.4 129 65.9
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 3.5e-26 123.2 185 50.3
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 2.9e-25 120.2 114 57.0
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 1.9e-24 117.5 91 67.0
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 1.9e-24 117.5 72 77.8
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-22 110.9 65 81.5
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.6e-21 107.1 190 48.9
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.6e-18 97.8 113 60.2
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 4.5e-18 96.3 49 91.8
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 4.5e-18 96.3 49 91.8
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.5e-16 90.5 107 50.5
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.0e-13 80.9 45 86.7
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 5.6e-08 62.8 40 72.5
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 1.6e-07 61.2 120 33.3


User provided reference genes

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