Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1548.1 822 100.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1470.7 858 92.0
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1331.2 819 85.2
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1228.4 822 78.1
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1222.6 822 77.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1221.8 822 77.4
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1218.4 822 77.5
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1210.7 821 76.5
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1200.7 823 76.7
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1199.1 821 75.5
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1198.3 821 75.4
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1197.6 822 76.5
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1194.1 821 75.5
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1192.9 822 76.3
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1188.3 821 75.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1187.2 821 75.9
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1187.2 821 75.8
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1185.2 828 74.6
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1184.9 823 76.2
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 0.0e+00 1181.8 822 76.2
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1174.1 817 76.0
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 0.0e+00 1173.7 788 77.8
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1164.4 824 73.5
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1163.3 787 78.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1156.0 822 73.5
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 0.0e+00 1155.2 823 75.1
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 0.0e+00 1154.8 822 74.1
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 0.0e+00 1151.3 822 73.8
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1151.0 823 74.6
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1149.4 824 73.9
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1146.0 822 73.4
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1146.0 822 73.1
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1143.3 822 72.1
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1134.4 820 72.7
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1132.5 825 71.9
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1128.2 823 72.9
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1124.8 821 71.6
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1124.4 821 71.7
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1122.1 820 71.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1121.3 820 71.1
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1120.5 821 71.7
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1119.8 821 72.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 0.0e+00 1114.4 819 70.8
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 0.0e+00 1113.6 818 70.9
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 0.0e+00 1110.1 820 71.6
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1105.9 821 71.5
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 0.0e+00 1105.1 818 70.5
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1104.7 845 70.4
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 820 71.1
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 0.0e+00 1095.9 896 67.3
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 0.0e+00 1088.6 823 69.0
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1086.6 825 69.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 0.0e+00 1085.9 843 68.9
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 825 70.2
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 0.0e+00 1080.5 757 75.7
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 0.0e+00 1080.1 830 68.9
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 0.0e+00 1079.3 815 69.8
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 820 69.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 820 68.9
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.9e-310 1068.9 819 68.4
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 4.3e-310 1067.8 824 68.9
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 4.3e-310 1067.8 759 73.8
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.1e-309 1065.4 756 73.8
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 2.8e-309 1065.1 820 68.7
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.8e-308 1062.4 834 68.2
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 860 66.0
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.4e-305 1052.0 820 67.7
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 3.2e-305 1051.6 820 67.8
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.6e-304 1049.3 816 68.0
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 1.3e-303 1046.2 820 67.6
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 3.0e-303 1045.0 820 67.3
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 6.6e-303 1043.9 820 67.7
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.6e-303 1043.9 820 67.3
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.5e-302 1042.0 846 67.1
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 7.3e-302 1040.4 821 67.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.4e-300 1036.2 824 66.9
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 6.8e-300 1033.9 824 66.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 4.6e-296 1021.1 816 67.8
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.5e-294 1016.1 840 65.2
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 5.6e-294 1014.2 821 66.1
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 6.8e-292 1007.3 815 65.6
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 6.8e-292 1007.3 820 66.3
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.4e-291 1005.0 921 59.9
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.3e-290 1003.0 867 63.2
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 2.9e-290 1001.9 820 65.6
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.9e-290 1001.1 831 64.9
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 4.1e-289 998.0 820 65.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 9.9e-267 923.7 824 59.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.9e-263 911.8 820 61.7
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 4.5e-259 898.3 827 58.0
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.5e-254 883.2 822 61.8
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.5e-254 883.2 674 70.2
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 3.3e-246 855.5 668 68.9
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.0e-242 844.0 820 57.4
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.1e-236 822.4 864 52.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.7e-231 804.7 595 71.8
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 2.6e-206 723.0 625 63.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 2.9e-173 613.2 840 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 3.1e-167 593.2 769 45.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 4.9e-165 585.9 786 43.8
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 2.7e-163 580.1 549 59.4
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 6.0e-155 552.4 404 73.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.6e-152 544.3 861 39.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.7e-149 534.3 492 60.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 7.9e-147 525.4 780 40.3
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 8.1e-144 515.4 377 69.2
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.2e-141 507.3 831 39.0
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.7e-139 500.4 324 77.5
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.7e-112 411.4 269 76.6
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 8.2e-112 409.1 483 52.0
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.3e-104 385.2 253 75.5
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 9.7e-97 359.0 275 64.7
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.7e-96 358.2 311 62.7
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.0e-82 310.5 243 72.4
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.9e-64 250.4 354 44.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.2e-56 224.9 806 25.7
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 6.4e-56 223.4 219 55.3
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.9e-47 195.3 163 61.3
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.8e-43 181.4 841 23.5
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 4.2e-39 167.5 119 72.3
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 5.4e-39 167.2 119 73.9
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.3e-36 156.8 246 42.7
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 9.0e-34 149.8 93 78.5
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-31 142.1 103 71.8
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.1e-26 124.8 208 39.9
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 6.9e-26 123.6 117 57.3
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-25 122.5 134 51.5
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 2.0e-25 122.1 91 65.9
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 2.0e-25 122.1 91 65.9
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.6e-25 120.2 69 92.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 2.5e-23 115.2 86 67.4
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 7.4e-20 103.6 170 40.6
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.2e-15 87.8 79 60.8
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 7.9e-14 83.6 179 33.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.6e-11 75.9 68 61.8
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.4e-09 68.2 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 6.5e-08 63.9 241 28.6


User provided reference genes

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