Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 0.0e+00 1257.3 667 100.0
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 9.1e-312 1073.2 629 92.1
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 4.4e-257 891.3 666 71.6
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.4e-242 843.2 628 71.7
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 5.5e-191 671.8 674 56.1
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.1e-186 656.0 665 55.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 4.7e-182 642.1 767 49.7
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.7e-177 626.3 675 54.1
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.2e-174 617.5 656 54.9
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.4e-173 614.0 653 54.8
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.4e-173 614.0 626 55.1
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 2.6e-172 609.8 811 47.3
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 5.7e-172 608.6 675 52.0
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 2.8e-171 606.3 758 50.0
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 3.1e-170 602.8 750 48.7
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 5.0e-168 595.5 754 47.9
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.0e-165 587.8 641 53.7
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.3e-165 586.6 750 48.4
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.4e-164 582.8 750 48.3
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 1.7e-163 580.5 747 50.5
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.2e-163 580.1 713 49.5
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.7e-163 579.3 747 50.3
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.9e-163 578.9 747 50.2
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.8e-162 577.0 647 52.4
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.5e-159 567.4 712 51.3
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 8.9e-157 558.1 670 52.1
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.4e-156 556.2 743 47.2
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 3.0e-152 543.1 727 47.2
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.2e-150 537.7 757 44.9
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 5.2e-149 532.3 755 45.3
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 3.4e-148 529.6 711 46.6
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.3e-144 517.7 680 45.0
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.8e-141 507.3 724 45.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.0e-141 506.1 720 45.8
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.2e-139 500.4 749 43.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 6.0e-137 492.3 669 46.5
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.7e-136 490.7 762 42.9
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 6.6e-136 488.8 664 45.6
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 8.6e-136 488.4 783 40.0
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 1.4e-133 481.1 676 45.0
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.8e-133 480.7 708 44.1
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 4.0e-133 479.6 721 42.9
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 8.9e-133 478.4 633 45.5
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.5e-132 477.6 763 40.4
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 7.6e-132 475.3 733 43.1
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 7.6e-132 475.3 407 61.9
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.3e-131 474.6 797 40.7
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.2e-129 468.0 782 40.4
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.6e-129 467.6 790 40.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 2.1e-129 467.2 725 42.1
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 3.9e-128 463.0 347 66.9
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.3e-126 458.0 780 40.3
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.8e-126 456.8 725 40.8
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.4e-125 453.8 714 44.3
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 9.9e-124 448.4 627 43.7
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.3e-123 448.0 339 68.7
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 3.8e-123 446.4 717 40.3
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 3.8e-123 446.4 742 41.5
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.8e-123 446.4 702 41.7
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.4e-122 443.7 710 41.7
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.4e-122 442.6 323 70.3
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 4.6e-121 439.5 350 64.9
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 6.0e-121 439.1 706 42.5
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 7.9e-121 438.7 688 41.9
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.0e-120 438.3 630 42.5
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 3.0e-120 436.8 643 44.5
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 3.3e-119 433.3 673 41.3
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.3e-119 433.0 621 43.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 5.6e-119 432.6 345 62.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 5.6e-119 432.6 697 41.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.1e-118 430.6 346 64.2
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 4.8e-118 429.5 821 37.8
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 6.2e-118 429.1 697 41.9
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 5.3e-117 426.0 423 56.7
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 9.0e-117 425.2 710 40.4
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 1.5e-116 424.5 686 43.1
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 3.4e-116 423.3 426 52.6
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.8e-116 422.5 698 41.3
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.3e-112 410.6 502 48.6
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.3e-110 404.8 344 60.2
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.1e-110 404.1 353 59.5
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.4e-109 401.4 435 51.5
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 5.3e-109 399.4 354 59.0
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.5e-108 397.9 706 38.5
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.5e-108 397.9 706 38.5
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.5e-108 397.9 475 48.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.0e-108 397.5 475 48.0
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.4e-108 396.7 706 38.5
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.0e-107 395.2 694 39.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.7e-107 394.4 339 58.1
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.4e-106 391.3 359 57.7
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.4e-106 391.3 359 57.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.4e-106 391.3 360 57.5
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.9e-106 391.0 414 52.4
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 5.5e-106 389.4 313 62.9
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.6e-105 387.9 691 38.2
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.7e-105 387.1 360 57.5
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 3.5e-105 386.7 403 53.6
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 6.7e-104 382.5 353 56.1
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 3.3e-103 380.2 673 38.9
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.8e-101 374.4 349 58.5
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.8e-101 374.4 353 55.5
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.2e-100 371.7 318 60.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 3.8e-99 366.7 673 38.3
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 5.0e-99 366.3 374 53.7
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.8e-96 357.8 375 53.3
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 2.8e-94 350.5 438 47.7
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 4.5e-84 316.6 243 69.1
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 2.9e-75 287.3 205 69.3
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 8.0e-73 279.3 204 67.6
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.7e-71 273.1 602 35.7
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.2e-63 248.8 271 45.8
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.5e-63 248.4 502 36.1
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.7e-62 245.0 370 37.3
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.1e-58 232.3 240 47.5
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 7.2e-58 229.6 303 45.5
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 1.4e-56 225.3 265 52.5
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 2.7e-52 211.1 414 36.0
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 8.0e-41 172.9 440 31.4
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 7.5e-39 166.4 129 67.4
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.0e-35 156.0 147 57.1
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.5e-34 151.4 113 66.4
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.2e-33 149.1 408 30.9
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.8e-32 145.2 152 51.3
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 3.1e-32 144.4 109 72.5
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.9e-26 125.2 281 29.2
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 5.8e-23 113.6 127 41.7
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.4e-21 109.0 111 51.4
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 9.2e-21 106.3 79 63.3
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 6.0e-20 103.6 83 62.7
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 2.1e-17 95.1 180 31.1
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.4e-16 92.4 62 69.4
Cfa010666 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.3e-14 85.9 55 78.2
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 6.4e-14 83.6 59 67.8
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 6.4e-14 83.6 59 67.8
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.6e-12 79.0 55 67.3
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 3.0e-11 74.7 62 67.7
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.7e-06 58.9 69 44.9


User provided reference genes

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