Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.7e-85 319.3 161 100.0
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.3e-48 196.8 129 78.3
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 2.4e-47 192.6 116 85.3
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 2.4e-47 192.6 116 86.2
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 2.2e-37 159.5 116 70.7
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.0e-34 150.6 121 66.9
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.7e-33 144.8 116 64.7
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.5e-30 136.7 118 59.3
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 2.6e-30 136.0 117 59.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 5.9e-30 134.8 115 60.0
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 7.6e-30 134.4 117 59.0
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.7e-29 133.3 118 59.3
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 2.9e-29 132.5 116 59.5
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 2.9e-29 132.5 117 59.8
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.8e-29 132.1 118 58.5
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 5.0e-29 131.7 114 57.9
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 5.0e-29 131.7 116 56.0
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.5e-29 131.3 118 57.6
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 8.5e-29 131.0 118 58.5
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 8.5e-29 131.0 117 57.3
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.1e-28 130.6 115 55.7
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.4e-28 130.2 114 58.8
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.4e-28 130.2 115 55.7
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.9e-28 129.8 118 57.6
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 1.9e-28 129.8 114 58.8
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 2.5e-28 129.4 114 55.3
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 5.5e-28 128.3 115 58.3
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 7.2e-28 127.9 114 56.1
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 9.3e-28 127.5 114 53.5
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 2.1e-27 126.3 111 57.7
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.1e-27 126.3 114 54.4
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 2.7e-27 125.9 111 57.7
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 2.7e-27 125.9 114 55.3
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 3.6e-27 125.6 115 55.7
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 3.6e-27 125.6 114 57.0
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 4.6e-27 125.2 115 54.8
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 6.1e-27 124.8 114 51.8
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 7.9e-27 124.4 124 49.2
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 7.9e-27 124.4 115 54.8
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 1.3e-26 123.6 114 54.4
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.8e-26 123.2 114 52.6
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 3.0e-26 122.5 114 53.5
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 3.9e-26 122.1 114 52.6
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 6.7e-26 121.3 114 55.3
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.7e-26 121.3 114 50.0
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 6.7e-26 121.3 114 51.8
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 8.8e-26 120.9 114 51.8
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 8.8e-26 120.9 116 50.9
Cfa014115 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.1e-25 120.6 72 83.3
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 1.1e-25 120.6 116 55.2
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.1e-25 120.6 114 54.4
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.5e-25 120.2 133 44.4
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.5e-25 120.2 114 51.8
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 1.5e-25 120.2 147 44.9
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.9e-25 119.8 134 47.8
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.9e-25 119.8 134 47.8
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.3e-25 119.0 116 55.2
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.3e-25 119.0 116 55.2
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.3e-25 119.0 116 55.2
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 4.3e-25 118.6 114 53.5
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 4.3e-25 118.6 114 53.5
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 4.3e-25 118.6 114 53.5
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 4.3e-25 118.6 114 49.1
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.3e-25 118.6 114 52.6
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 5.7e-25 118.2 117 55.6
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 9.7e-25 117.5 116 50.0
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.3e-24 117.1 130 46.9
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 1.3e-24 117.1 133 46.6
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.7e-24 116.7 116 50.0
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.7e-24 116.7 115 51.3
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 1.7e-24 116.7 120 47.5
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.7e-24 116.7 151 45.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.2e-24 116.3 114 52.6
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 2.2e-24 116.3 114 50.0
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 2.8e-24 115.9 114 51.8
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 3.7e-24 115.5 114 51.8
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 3.7e-24 115.5 114 51.8
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.7e-24 115.5 115 52.2
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 3.7e-24 115.5 116 51.7
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 4.8e-24 115.2 114 50.9
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 6.3e-24 114.8 114 48.2
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 8.2e-24 114.4 114 52.6
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 8.2e-24 114.4 114 51.8
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 8.2e-24 114.4 116 50.9
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 8.2e-24 114.4 114 51.8
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 1.8e-23 113.2 116 50.0
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 1.8e-23 113.2 118 55.1
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.8e-23 113.2 114 47.4
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 3.1e-23 112.5 132 44.7
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 3.1e-23 112.5 118 52.5
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 4.1e-23 112.1 124 45.2
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 5.3e-23 111.7 114 47.4
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 6.9e-23 111.3 115 48.7
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 9.1e-23 110.9 115 52.2
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 1.5e-22 110.2 117 54.7
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 1.5e-22 110.2 111 51.4
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 2.0e-22 109.8 130 46.2
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 3.4e-22 109.0 115 52.2
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 3.4e-22 109.0 117 52.1
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 4.5e-22 108.6 116 48.3
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 4.5e-22 108.6 115 47.8
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 4.5e-22 108.6 114 48.2
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 5.9e-22 108.2 116 48.3
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 5.9e-22 108.2 126 45.2
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 5.9e-22 108.2 131 44.3
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 7.7e-22 107.8 117 53.0
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 7.7e-22 107.8 95 57.9
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 7.7e-22 107.8 95 57.9
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 7.7e-22 107.8 95 57.9
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.0e-21 107.5 115 47.8
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.3e-21 107.1 117 50.4
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 1.7e-21 106.7 116 50.0
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.9e-21 105.9 116 49.1
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 2.9e-21 105.9 95 60.0
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 5.0e-21 105.1 118 50.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 5.0e-21 105.1 115 51.3
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 5.0e-21 105.1 118 50.0
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 5.0e-21 105.1 124 45.2
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 5.0e-21 105.1 95 56.8
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 6.5e-21 104.8 114 47.4
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 8.5e-21 104.4 95 56.8
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.4e-20 103.6 91 52.7
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 2.5e-20 102.8 117 47.9
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.1e-19 99.8 130 42.3
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.1e-19 98.2 93 57.0
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 7.9e-19 97.8 116 45.7
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.0e-18 97.4 124 43.5
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.8e-18 96.7 107 49.5
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 3.0e-18 95.9 111 52.3
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 3.9e-18 95.5 107 48.6
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 5.1e-18 95.1 115 42.6
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.1e-17 94.0 110 46.4
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.1e-17 94.0 110 46.4
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 2.0e-17 93.2 91 53.8
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 2.6e-17 92.8 114 45.6
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 4.4e-17 92.0 119 47.9
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 4.4e-17 92.0 110 46.4
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.4e-17 91.3 108 50.9
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 7.4e-17 91.3 83 56.6
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 9.7e-17 90.9 109 47.7
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.3e-16 90.5 111 42.3
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-16 90.5 83 54.2
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 1.1e-15 87.4 125 40.0
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 1.1e-15 87.4 116 41.4
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.4e-15 86.3 113 42.5
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 3.1e-15 85.9 113 41.6
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 9.1e-15 84.3 113 43.4
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.5e-14 83.6 110 47.3
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.6e-14 82.8 113 44.2
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 3.2e-12 75.9 111 36.9
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.6e-11 73.6 153 35.3
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.1e-11 73.2 73 50.7
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 8.0e-11 71.2 56 64.3
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 1.4e-10 70.5 113 39.8
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 3.0e-10 69.3 111 34.2
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 3.9e-10 68.9 68 50.0
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 3.9e-10 68.9 120 39.2
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 8.8e-10 67.8 111 36.0
COL.COLO4_09217 Corchorus olitorius HOM05D003293 ORTHO05D022256 1.1e-09 67.4 63 54.0
Nitab4.5_0003468g0040 Nicotiana tabacum HOM05D003293 ORTHO05D022256 1.5e-09 67.0 62 51.6
VMungo1383G2096 Vigna mungo HOM05D003293 ORTHO05D022256 9.7e-09 64.3 71 47.9
Ca_28902_v3 Cicer arietinum L. HOM05D003293 ORTHO05D149213 5.3e-07 58.5 74 40.5


User provided reference genes

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