Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 2.7e-167 592.0 321 100.0
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 1.5e-90 337.0 300 70.0
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 2.9e-65 253.1 311 57.9
Cfa005244 Carpinus fangiana HOM05D023024 ORTHO05D008438 1.5e-29 134.4 185 56.8
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 2.6e-21 107.1 323 36.5
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 2.3e-17 94.0 174 46.0
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 2.4e-14 84.0 280 34.3
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 6.9e-14 82.4 186 36.6
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 6.9e-14 82.4 291 32.3
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 1.2e-13 81.6 132 43.9
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 1.7e-12 77.8 132 42.4
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 3.8e-12 76.6 180 36.7
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.4e-11 74.7 278 32.7
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 1.4e-11 74.7 63 65.1
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 1.9e-11 74.3 119 44.5
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 2.4e-11 73.9 239 33.5
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 9.3e-11 72.0 125 44.8
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 9.3e-11 72.0 162 38.9
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 1.6e-10 71.2 190 35.8
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.1e-10 70.9 191 37.7
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 6.0e-10 69.3 65 60.0
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 1.3e-09 68.2 75 53.3
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.9e-09 66.6 140 37.1
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 5.1e-09 66.2 242 33.5
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 5.1e-09 66.2 237 32.9
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 5.1e-09 66.2 171 36.3
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 8.7e-09 65.5 140 40.7
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 1.9e-08 64.3 98 43.9
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 2.5e-08 63.9 66 56.1
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 9.6e-08 62.0 64 51.6
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 9.6e-08 62.0 79 50.6
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 1.3e-07 61.6 64 53.1
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.3e-07 61.6 178 30.9
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 1.6e-07 61.2 64 56.2
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.6e-07 61.2 205 33.2
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 2.1e-07 60.8 77 49.4
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 2.1e-07 60.8 77 49.4
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 2.1e-07 60.8 77 49.4
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 2.1e-07 60.8 86 41.9
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 3.7e-07 60.1 57 59.6
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 4.8e-07 59.7 76 51.3
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 4.8e-07 59.7 151 38.4
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 8.1e-07 58.9 270 31.1
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.4e-06 58.2 65 49.2
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 1.4e-06 58.2 173 32.4
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.8e-06 57.8 147 37.4
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 1.8e-06 57.8 93 41.9
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 2.4e-06 57.4 66 53.0
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 3.1e-06 57.0 118 36.4
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 3.1e-06 57.0 185 35.7
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 3.1e-06 57.0 81 42.0
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 3.1e-06 57.0 153 34.6
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 4.0e-06 56.6 117 38.5
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 4.0e-06 56.6 81 40.7
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 4.0e-06 56.6 204 34.3
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 5.3e-06 56.2 94 41.5
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 5.3e-06 56.2 246 32.1
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 6.9e-06 55.8 91 42.9
FvH4_3g34300 Fragaria vesca HOM05D016629 ORTHO05D025349 9.0e-06 55.5 201 33.3
RcHm_v2.0_Chr5g0061881 Rosa chinensis HOM05D016629 ORTHO05D025349 9.0e-06 55.5 154 37.7


User provided reference genes

Program Settings