Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 4.4e-177 625.2 350 100.0
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 8.7e-109 398.3 205 96.6
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.6e-84 317.0 210 73.3
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 2.9e-72 276.9 199 71.9
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 8.5e-72 275.4 226 61.5
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.3e-68 263.5 227 59.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.2e-64 250.8 228 56.6
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 8.0e-62 242.3 312 46.2
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 3.0e-61 240.4 227 54.2
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 3.8e-56 223.4 221 54.8
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 1.2e-54 218.4 196 60.2
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.6e-54 218.0 302 44.4
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.2e-52 211.8 293 40.6
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 7.5e-52 209.1 208 53.4
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.3e-51 208.4 279 44.4
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.3e-51 208.4 207 55.6
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.7e-51 208.0 282 44.7
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.2e-51 207.6 277 43.7
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 6.3e-51 206.1 208 53.4
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 4.1e-50 203.4 233 50.2
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 7.0e-50 202.6 233 50.2
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.2e-49 201.8 201 55.2
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 1.3e-48 198.4 199 54.8
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.9e-47 194.5 225 49.8
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 3.3e-47 193.7 212 48.1
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.1e-46 191.0 228 48.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 4.7e-46 189.9 225 48.0
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.0e-45 188.7 217 45.2
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.7e-43 181.4 227 47.6
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.9e-43 180.6 240 42.1
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 4.1e-42 176.8 209 46.4
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.7e-40 171.4 223 42.2
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 3.9e-40 170.2 230 40.0
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.1e-39 168.7 200 45.0
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 3.3e-39 167.2 215 40.9
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.3e-39 167.2 202 46.5
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 4.3e-39 166.8 252 46.4
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 1.6e-38 164.9 232 39.7
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.6e-38 163.7 189 47.1
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.1e-37 160.6 212 42.9
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 9.8e-36 155.6 231 39.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.3e-35 155.2 192 40.1
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 6.4e-35 152.9 220 44.1
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 5.4e-34 149.8 229 38.0
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.6e-33 148.3 291 32.3
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 4.6e-33 146.7 196 41.8
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 4.6e-33 146.7 207 42.5
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.8e-33 146.0 205 42.4
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 7.8e-33 146.0 207 42.5
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.3e-32 145.2 203 37.4
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.7e-32 144.8 205 39.0
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.0e-32 144.1 232 39.2
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 8.6e-32 142.5 230 37.0
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.5e-31 141.7 229 33.6
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.9e-31 141.4 182 40.1
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 1.9e-31 141.4 166 50.6
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 3.3e-31 140.6 182 41.8
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 5.6e-31 139.8 206 38.8
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 9.5e-31 139.0 179 38.0
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.6e-30 138.3 296 31.8
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.1e-30 137.9 230 38.7
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.2e-30 136.3 179 37.4
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 8.1e-30 136.0 185 40.0
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 8.1e-30 136.0 206 37.9
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.3e-29 134.4 236 32.6
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.3e-29 134.4 233 37.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 5.2e-29 133.3 228 36.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.8e-29 132.9 201 38.3
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 8.9e-29 132.5 198 37.4
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.2e-28 132.1 228 36.4
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.4e-28 130.6 222 36.0
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.4e-28 130.6 228 36.4
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 7.5e-28 129.4 200 37.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 9.9e-28 129.0 224 33.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 1.1e-26 125.6 192 37.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.1e-26 125.6 232 36.2
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.4e-26 125.2 190 37.9
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.4e-26 125.2 228 34.2
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.9e-26 124.8 228 34.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 2.4e-26 124.4 210 36.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.4e-26 124.4 210 36.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 5.4e-26 123.2 207 39.6
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 9.2e-26 122.5 176 41.5
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.2e-25 122.1 195 35.9
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.1e-25 121.3 187 38.0
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 4.6e-25 120.2 181 39.2
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 7.8e-25 119.4 223 35.0
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.3e-24 118.6 204 35.3
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.7e-24 118.2 203 36.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 2.3e-24 117.9 235 31.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 3.0e-24 117.5 324 30.2
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 6.6e-24 116.3 183 37.2
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 6.6e-24 116.3 217 33.2
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 8.6e-24 115.9 179 38.5
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-23 115.5 120 50.0
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 4.3e-23 113.6 200 36.5
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.3e-23 113.6 131 41.2
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 5.6e-23 113.2 168 36.9
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.6e-22 111.7 195 37.4
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 2.8e-22 110.9 227 31.3
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.6e-22 110.5 197 34.5
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.6e-22 110.5 123 50.4
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 4.7e-22 110.2 324 29.6
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 4.7e-22 110.2 289 28.0
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.8e-21 108.2 188 34.0
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 2.4e-21 107.8 200 33.5
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-20 105.5 164 36.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.2e-20 105.5 230 30.4
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 2.6e-20 104.4 159 35.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.8e-20 103.2 161 34.8
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 9.9e-20 102.4 229 33.6
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.3e-19 102.1 215 29.8
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 4.9e-19 100.1 197 32.5
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.9e-18 98.2 134 40.3
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 9.2e-18 95.9 145 33.8
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.6e-17 95.1 233 29.6
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.1e-17 94.7 158 35.4
C04p23520 Brassica napus HOM05D004255 ORTHO05D004815 7.8e-17 92.8 202 38.1
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.7e-16 91.7 192 30.2
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 8.7e-16 89.4 127 36.2
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 7.3e-15 86.3 167 34.1
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 7.3e-15 86.3 167 34.1
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 9.6e-15 85.9 88 44.3
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 3.6e-14 84.0 175 32.6
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.2e-14 83.2 137 34.3
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 6.2e-14 83.2 159 32.1
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 8.1e-14 82.8 171 32.7
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-13 82.4 99 40.4
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.4e-13 82.0 174 30.5
BcaC02g10932 Brassica carinata HOM05D004255 ORTHO05D004815 3.1e-13 80.9 132 43.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.1e-13 80.9 174 33.9
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.3e-13 80.1 163 32.5
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 5.3e-13 80.1 174 33.9
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.2e-12 79.0 173 31.8
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 3.4e-12 77.4 162 33.3
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.4e-12 77.4 168 32.1
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.4e-12 77.0 166 31.9
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 9.9e-12 75.9 215 30.2
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.7e-11 75.1 172 30.8
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.7e-11 75.1 172 30.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 2.9e-11 74.3 97 41.2
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 4.9e-11 73.6 57 57.9
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 1.4e-10 72.0 90 43.3
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-10 72.0 130 37.7
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 9.3e-10 69.3 168 28.6
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.1e-09 68.2 100 37.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 4.6e-09 67.0 75 44.0
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 1.7e-08 65.1 161 32.3
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 1.7e-08 65.1 56 51.8
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.5e-07 62.0 304 22.7
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 7.3e-07 59.7 127 36.2
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.1e-06 58.2 181 25.4
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 2.8e-06 57.8 58 48.3
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 3.6e-06 57.4 151 26.5


User provided reference genes

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