Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 0.0e+00 1336.6 684 100.0
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 0.0e+00 1265.0 728 90.4
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 0.0e+00 1152.5 682 86.8
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 0.0e+00 1125.9 688 83.3
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.7e-304 1048.9 686 78.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.9e-295 1018.8 690 75.8
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.7e-294 1015.0 690 76.2
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.5e-292 1009.2 689 75.9
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 4.3e-292 1007.7 683 77.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.3e-288 996.1 677 75.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.5e-287 991.9 689 74.7
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.1e-286 988.8 683 74.2
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 5.1e-285 984.2 684 74.1
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.4e-282 975.3 683 72.8
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.6e-278 962.6 690 72.0
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.3e-277 958.7 690 71.7
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.1e-276 956.4 684 71.8
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 2.0e-276 955.7 688 71.1
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.8e-275 951.8 690 71.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.8e-274 949.1 687 72.1
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 7.0e-274 947.2 686 72.3
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.6e-273 946.0 691 71.3
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.8e-272 941.4 678 71.1
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.9e-271 939.1 684 71.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.6e-270 936.0 682 72.1
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.6e-270 934.9 674 71.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 1.4e-269 932.9 684 70.3
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.3e-267 926.4 675 70.7
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 6.3e-267 924.1 691 70.8
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 2.2e-264 915.6 692 69.4
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 2.9e-264 915.2 717 67.9
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 8.5e-264 913.7 682 70.5
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 8.5e-264 913.7 675 71.9
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 4.0e-261 904.8 685 67.7
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 4.0e-261 904.8 679 69.2
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 5.2e-261 904.4 673 69.2
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.4e-260 901.7 682 70.1
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 3.4e-260 901.7 686 68.8
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 3.4e-260 901.7 690 67.4
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 4.4e-260 901.4 598 76.8
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 9.8e-260 900.2 675 69.5
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.4e-258 896.3 702 67.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 9.1e-258 893.6 676 69.2
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.2e-257 893.3 680 69.3
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.3e-256 889.8 683 67.8
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.0e-256 887.9 676 69.1
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.8e-254 882.1 681 68.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 8.3e-251 870.5 684 67.1
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.4e-250 869.0 701 65.3
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 7.0e-250 867.5 684 67.0
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 3.3e-247 858.6 725 63.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 6.1e-246 854.4 689 66.0
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.4e-242 842.4 728 62.5
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 9.2e-242 840.5 692 63.3
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.7e-240 836.3 598 71.7
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.4e-234 815.8 638 67.4
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 7.1e-234 814.3 691 61.4
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.5e-231 805.8 688 62.9
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 4.3e-231 805.1 486 81.7
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 5.6e-231 804.7 683 64.3
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.6e-230 803.1 682 62.3
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 6.8e-229 797.7 686 63.1
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.5e-228 796.6 683 61.9
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.5e-228 796.6 690 61.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.0e-228 796.2 685 61.6
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.7e-227 792.0 682 62.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.9e-226 789.6 682 61.9
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.4e-226 789.3 601 68.6
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 7.1e-226 787.7 686 61.5
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 7.8e-225 784.3 682 61.1
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.0e-224 782.3 669 61.4
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 6.2e-222 774.6 682 60.6
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.8e-221 773.1 683 60.6
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.2e-220 770.4 674 62.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.3e-219 766.9 607 67.7
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.9e-218 763.1 630 63.7
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.4e-218 761.5 687 58.5
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.6e-217 760.0 677 60.6
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 2.7e-217 759.2 682 60.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.5e-215 753.4 580 68.1
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 4.3e-215 751.9 683 60.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.6e-215 751.5 689 59.4
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.1e-214 749.6 680 59.9
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.0e-212 743.0 657 60.4
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.3e-211 740.3 620 63.7
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.4e-210 736.1 502 75.5
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 6.6e-208 728.0 679 58.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.2e-195 686.4 677 56.0
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.9e-194 683.3 679 56.4
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 2.1e-190 669.8 716 53.2
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 5.3e-189 665.2 677 53.9
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.2e-182 643.3 635 56.4
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.5e-172 610.5 603 55.4
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.0e-171 607.8 624 56.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.2e-148 531.2 708 45.9
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.7e-145 520.0 622 48.9
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.9e-138 497.3 301 78.1
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 3.5e-132 476.5 519 49.1
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.1e-130 471.5 703 42.8
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.0e-127 460.7 281 77.6
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 6.0e-116 422.5 357 58.5
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.2e-78 297.7 311 57.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 7.9e-76 289.3 218 66.5
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.1e-45 189.1 103 85.4
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.7e-44 184.5 103 83.5
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.0e-43 181.0 103 81.6
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.7e-42 176.0 99 81.8
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.1e-37 162.5 419 32.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-32 145.6 103 67.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 9.1e-32 142.9 84 79.8
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 5.9e-31 140.2 199 46.7
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.2e-17 95.1 62 69.4
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-14 85.9 47 83.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.9e-14 84.3 51 74.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 5.0e-14 84.0 325 24.9
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 9.5e-13 79.7 183 32.2


User provided reference genes

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