Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 5.7e-96 355.9 566 100.0
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 6.1e-66 256.1 178 83.7
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.8e-62 244.6 150 80.7
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 8.0e-58 229.2 179 65.9
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 9.2e-54 215.7 133 80.5
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 1.6e-53 214.9 184 63.0
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 2.5e-35 154.5 183 44.3
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 1.1e-33 149.1 182 46.7
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 4.4e-32 143.7 142 50.7
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 1.7e-31 141.7 171 45.6
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 8.6e-28 129.4 160 40.0
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.5e-27 128.6 158 44.3
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 1.5e-27 128.6 146 45.2
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.2e-26 125.6 178 39.9
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 1.6e-26 125.2 158 43.7
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.8e-26 124.4 158 42.4
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.6e-26 124.0 157 43.9
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 4.7e-26 123.6 148 46.6
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 8.1e-26 122.9 158 42.4
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 1.1e-25 122.5 158 42.4
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.4e-25 122.1 158 41.8
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 3.1e-25 120.9 150 42.0
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 4.4e-24 117.1 143 39.2
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 4.4e-24 117.1 174 40.2
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 5.8e-24 116.7 161 40.4
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.3e-23 115.5 142 42.3
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 1.3e-23 115.5 176 38.6
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 1.7e-23 115.2 154 41.6
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 1.7e-23 115.2 155 43.2
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 3.8e-23 114.0 174 38.5
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 4.9e-23 113.6 154 41.6
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 4.9e-23 113.6 175 39.4
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 4.9e-23 113.6 159 40.3
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 6.4e-23 113.2 171 39.8
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 6.4e-23 113.2 162 40.7
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.1e-22 112.5 156 41.7
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.4e-22 112.1 154 40.9
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 4.2e-22 110.5 113 54.9
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 4.2e-22 110.5 113 54.9
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 7.1e-22 109.8 158 41.8
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 2.1e-21 108.2 184 35.3
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 7.8e-21 106.3 154 39.6
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.3e-20 105.5 149 40.9
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 1.1e-19 102.4 144 39.6
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 3.3e-19 100.9 176 36.4
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.1e-18 98.2 164 37.8
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 2.1e-18 98.2 149 38.9
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.8e-18 97.8 176 35.8
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 3.6e-18 97.4 112 43.8
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 6.2e-18 96.7 128 39.8
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 8.1e-18 96.3 185 35.7
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 8.1e-18 96.3 172 34.9
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 3.1e-17 94.4 149 38.3
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 3.1e-17 94.4 77 55.8
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.0e-17 94.0 163 38.0
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.9e-17 93.2 162 38.3
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 6.9e-17 93.2 187 34.2
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 9.0e-17 92.8 139 38.8
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 3.4e-16 90.9 121 38.8
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 5.8e-16 90.1 132 39.4
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 7.6e-16 89.7 132 39.4
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 7.6e-16 89.7 185 35.1
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.3e-15 89.0 153 37.3
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 1.7e-15 88.6 167 42.5
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 2.2e-15 88.2 96 52.1
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.9e-15 87.8 132 38.6
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 3.8e-15 87.4 132 38.6
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 4.9e-15 87.0 140 35.0
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.4e-15 86.3 164 37.2
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.4e-15 86.3 164 37.2
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 8.4e-15 86.3 137 35.8
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 1.1e-14 85.9 78 55.1
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.4e-14 85.5 141 37.6
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 2.4e-14 84.7 76 56.6
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 4.2e-14 84.0 111 43.2
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 5.4e-14 83.6 156 37.8
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.2e-13 82.4 160 35.6
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.2e-13 82.4 160 35.6
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 1.2e-13 82.4 125 37.6
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.6e-13 82.0 160 34.4
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 2.1e-13 81.6 82 48.8
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.6e-13 80.5 133 37.6
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-12 79.3 145 35.9
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-12 79.0 160 35.0
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-12 79.0 160 35.0
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 1.3e-12 79.0 95 42.1
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 2.3e-12 78.2 144 30.6
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 3.0e-12 77.8 132 31.1
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 3.0e-12 77.8 124 35.5
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 1.1e-11 75.9 128 35.2
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 4.3e-11 73.9 92 51.1
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-10 72.4 130 34.6
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-10 72.4 130 34.6
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.6e-10 72.0 141 33.3
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 3.7e-10 70.9 53 67.9
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 6.2e-10 70.1 82 46.3
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.1e-09 69.3 123 34.1
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 1.1e-09 69.3 160 30.0
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.8e-09 68.6 167 27.5
Actinidia24456 Actinidia chinensis HOM05D006694 ORTHO05D008240 4.0e-09 67.4 75 45.3
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.3e-09 67.0 139 29.5
Lsat_1_v5_gn_2_63881 Lactuca sativa HOM05D006694 ORTHO05D008240 1.2e-08 65.9 62 46.8
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 3.4e-08 64.3 120 33.3
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-07 62.4 139 36.7
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.3e-07 62.4 114 33.3
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 3.8e-07 60.8 82 40.2
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.4e-06 58.9 86 37.2
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.9e-06 58.5 127 26.8
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 2.4e-06 58.2 82 37.8
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 4.2e-06 57.4 155 24.5
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.3e-06 56.2 110 30.0
Hma1.2p1_1276F.1_g272140 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 9.3e-06 56.2 123 26.0


User provided reference genes

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