Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 7.2e-259 896.7 454 100.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.6e-245 852.4 444 96.8
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.7e-213 745.3 444 84.7
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 6.4e-191 671.0 540 65.9
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.6e-186 656.4 443 75.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.8e-186 655.6 437 75.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 5.2e-185 651.4 443 74.0
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 9.0e-185 650.6 445 74.8
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 6.4e-183 644.4 456 73.5
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.6e-181 639.8 440 73.6
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.5e-181 638.6 440 73.4
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.6e-181 638.3 440 73.4
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.3e-180 636.7 440 73.4
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 3.9e-180 635.2 437 73.9
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 5.1e-180 634.8 443 73.6
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 8.7e-180 634.0 442 74.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.1e-179 633.6 440 73.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.5e-179 633.3 440 72.0
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.6e-178 628.6 443 72.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.2e-178 627.9 432 73.8
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 8.1e-178 627.5 440 70.9
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 5.3e-177 624.8 435 72.4
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 9.0e-177 624.0 438 72.1
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.2e-176 623.6 445 70.3
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.1e-174 617.1 438 73.3
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.2e-174 615.5 445 71.5
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 9.3e-174 614.0 439 71.5
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 3.5e-173 612.1 441 72.1
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 7.9e-173 610.9 441 72.1
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.9e-172 608.6 438 70.5
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 8.7e-172 607.4 437 71.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.9e-171 606.3 437 70.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 4.3e-171 605.1 432 71.5
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 7.4e-171 604.4 442 70.4
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.3e-170 603.6 437 70.9
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 8.1e-170 600.9 446 68.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-169 600.5 436 70.4
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.8e-169 599.7 434 71.7
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.4e-169 599.4 442 71.0
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.0e-169 598.6 443 70.2
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.0e-168 596.3 443 68.4
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.6e-168 595.9 435 69.0
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 5.8e-168 594.7 444 68.0
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 9.9e-168 594.0 429 70.2
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 8.4e-167 590.9 440 69.3
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 9.3e-166 587.4 444 66.9
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 7.9e-165 584.3 442 67.0
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 8.7e-164 580.9 444 66.7
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.1e-162 576.2 439 65.6
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 4.8e-162 575.1 438 66.7
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.1e-161 573.9 438 66.7
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.0e-161 572.0 441 66.7
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.9e-161 571.2 447 68.5
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.5e-160 570.1 441 67.8
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 2.0e-160 569.7 438 67.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 5.8e-160 568.2 457 63.5
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 2.2e-159 566.2 441 65.5
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.2e-159 566.2 443 66.4
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-159 566.2 442 66.5
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 2.2e-159 566.2 441 65.8
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.9e-158 563.1 439 65.6
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 7.1e-158 561.2 443 66.1
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.0e-156 557.4 419 68.0
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 3.0e-156 555.8 430 66.7
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 3.9e-156 555.4 470 62.1
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 6.7e-156 554.7 443 63.9
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.9e-155 553.1 434 64.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 4.3e-155 552.0 441 63.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 7.4e-155 551.2 443 63.4
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 2.8e-154 549.3 445 65.2
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 2.4e-153 546.2 433 64.0
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.2e-151 539.7 439 63.8
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 6.5e-151 538.1 439 66.3
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 8.5e-151 537.7 443 64.3
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-150 537.3 444 64.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 9.3e-150 534.3 442 61.3
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 6.1e-149 531.6 440 62.7
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.4e-148 530.4 439 63.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.0e-148 529.3 439 62.6
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 3.9e-148 528.9 443 62.3
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.7e-148 528.1 431 63.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-147 527.3 446 62.1
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-147 526.9 439 62.2
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.5e-147 526.9 439 62.2
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.9e-147 526.6 431 63.6
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 2.5e-147 526.2 441 62.8
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.4e-145 519.6 425 62.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 3.1e-145 519.2 443 61.6
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 4.1e-145 518.8 441 61.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.7e-143 513.5 444 60.8
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 2.2e-143 513.1 444 61.3
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.2e-143 513.1 443 60.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 3.8e-143 512.3 439 63.3
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.5e-142 509.6 453 58.7
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 4.2e-142 508.8 425 61.9
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 7.9e-141 504.6 450 60.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-140 503.8 423 61.5
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.1e-140 501.9 441 61.9
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 6.7e-140 501.5 448 58.0
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 6.7e-140 501.5 446 59.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.5e-139 500.4 447 58.4
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 9.7e-139 497.7 450 58.4
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-137 493.8 450 58.2
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 9.1e-137 491.1 439 58.5
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.0e-136 490.0 437 60.0
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.5e-134 483.0 453 56.1
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.2e-133 480.7 445 57.8
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.6e-133 480.3 478 56.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 2.3e-132 476.5 369 66.9
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 5.2e-132 475.3 429 62.9
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.4e-129 466.5 439 59.2
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 5.3e-129 465.3 417 58.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 5.0e-127 458.8 453 54.7
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 8.0e-125 451.4 349 67.3
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 9.1e-121 438.0 386 59.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.0e-120 436.8 365 63.6
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.1e-117 426.8 319 65.8
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 8.3e-114 414.8 442 52.7
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.7e-112 408.3 423 54.4
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.7e-109 399.1 336 61.9
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.7e-106 390.6 436 52.8
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 4.9e-106 389.0 335 59.7
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 3.3e-102 376.3 308 61.7
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.9e-97 360.5 306 62.4
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 2.3e-95 353.6 428 46.5
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 6.2e-93 345.5 301 59.1
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 9.2e-89 331.6 432 45.4
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 3.0e-87 326.6 490 40.4
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 8.9e-84 315.1 193 76.7
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.9e-79 299.7 236 62.3
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.3e-78 296.6 298 53.0
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 9.2e-73 278.5 288 51.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.1e-70 271.6 488 36.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 2.5e-70 270.4 191 71.2
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 6.2e-69 265.8 244 58.6
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.4e-68 263.8 245 60.8
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-52 211.1 188 60.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 1.7e-50 204.5 132 72.7
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 2.5e-38 164.1 306 33.7
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-35 155.2 146 57.5
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.2e-35 155.2 415 30.8
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.1e-32 144.4 217 38.2
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.3e-30 137.1 87 70.1
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 6.9e-28 129.4 80 70.0
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.5e-27 126.7 87 67.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 9.7e-22 109.0 129 52.7
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.7e-18 98.2 113 50.4
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 2.9e-18 97.4 67 67.2
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.2e-17 93.6 64 67.2
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.1e-16 91.3 64 65.6
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 2.6e-11 74.3 49 67.3
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.6e-11 74.3 57 64.9
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 3.0e-07 60.8 184 26.6
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-06 58.5 65 46.2


User provided reference genes

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