Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011233 Carpinus fangiana HOM05D008140 ORTHO05D009650 6.1e-103 377.5 189 100.0
CiPaw.13G036800 Carya illinoinensis HOM05D008140 ORTHO05D009650 2.9e-44 182.6 189 58.7
QL04p041480 Quercus lobata HOM05D008140 ORTHO05D009650 4.0e-38 162.2 217 47.9
Potri.010G235400 Populus trichocarpa HOM05D008140 ORTHO05D009650 5.3e-38 161.8 176 52.8
Sabra10G0182500 Salix brachista HOM05D008140 ORTHO05D009650 3.4e-37 159.1 170 55.3
Prupe.2G086100 Prunus persica HOM05D008140 ORTHO05D009650 1.7e-36 156.8 161 54.7
QL04p041665 Quercus lobata HOM05D008140 ORTHO05D009650 1.7e-36 156.8 174 54.0
Potri.008G025100 Populus trichocarpa HOM05D008140 ORTHO05D009650 2.9e-36 156.0 181 53.0
MD07G1068400 Malus domestica HOM05D008140 ORTHO05D009650 6.4e-36 154.8 159 54.7
Potri.008G025200 Populus trichocarpa HOM05D008140 ORTHO05D009650 5.4e-35 151.8 180 50.6
QL04p042101 Quercus lobata HOM05D008140 ORTHO05D009650 1.2e-34 150.6 172 52.3
Cfa011234 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.5e-32 143.7 188 47.3
Haze_02596 Corylus avellana HOM05D008140 ORTHO05D009650 1.5e-32 143.7 182 47.8
Duzib106G0172 Durio zibethinus HOM05D008140 ORTHO05D009650 3.6e-31 139.0 182 48.9
RcHm_v2.0_Chr1g0333141 Rosa chinensis HOM05D008140 ORTHO05D009650 1.4e-30 137.1 157 52.2
Ciclev10033301m.g Citrus clementina HOM05D008140 ORTHO05D009650 2.4e-30 136.3 182 45.6
Sabra08G0016900 Salix brachista HOM05D008140 ORTHO05D009650 3.1e-30 136.0 160 50.0
RcHm_v2.0_Chr1g0333151 Rosa chinensis HOM05D008140 ORTHO05D009650 9.0e-30 134.4 157 51.6
FAN01G1993 Fragaria x ananassa HOM05D008140 ORTHO05D009650 3.4e-29 132.5 167 48.5
Thecc.10G110900 Theobroma cacao HOM05D008140 ORTHO05D009650 3.4e-29 132.5 182 46.7
COL.COLO4_06812 Corchorus olitorius HOM05D008140 ORTHO05D009650 4.5e-29 132.1 169 49.7
FAN03G1479 Fragaria x ananassa HOM05D008140 ORTHO05D009650 9.9e-29 131.0 168 48.8
FvH4_7g05940 Fragaria vesca HOM05D008140 ORTHO05D009650 3.8e-28 129.0 168 48.8
FAN06G2722 Fragaria x ananassa HOM05D008140 ORTHO05D009650 3.8e-28 129.0 168 48.8
FAN10G4346 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.4e-27 127.1 168 48.8
Haze_02595 Corylus avellana HOM05D008140 ORTHO05D009650 1.8e-25 120.2 144 49.3
CiPaw.13G036900 Carya illinoinensis HOM05D008140 ORTHO05D009650 3.1e-22 109.4 166 44.0
Cfa011231 Carpinus fangiana HOM05D008140 ORTHO05D009650 2.6e-21 106.3 136 48.5
TWI38G0562 Tripterygium wilfordii HOM05D008140 ORTHO05D009650 3.4e-21 105.9 149 43.6
Haze_02597 Corylus avellana HOM05D008140 ORTHO05D009650 1.1e-19 100.9 136 47.8
Cfa011235 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.9e-19 100.1 116 51.7
Manes.07G090200 Manihot esculenta HOM05D008140 ORTHO05D009650 3.2e-19 99.4 133 49.6
QL04p041477 Quercus lobata HOM05D008140 ORTHO05D009650 7.1e-19 98.2 152 42.8
A03p21600 Brassica napus HOM05D008140 ORTHO05D009650 9.3e-19 97.8 175 40.6
BraA03t11396Z Brassica rapa HOM05D008140 ORTHO05D009650 9.3e-19 97.8 175 40.6
CiPaw.13G036700 Carya illinoinensis HOM05D008140 ORTHO05D009650 2.1e-18 96.7 118 48.3
Lalb_Chr06g0170171 Lupinus albus HOM05D008140 ORTHO05D009650 2.1e-18 96.7 146 41.1
CiPaw.14G029100 Carya illinoinensis HOM05D008140 ORTHO05D009650 1.8e-17 93.6 163 42.9
TAR636G0417 Trochodendron aralioides HOM05D008140 ORTHO05D009650 5.1e-17 92.0 176 39.2
Rhsim03G0105800 Rhododendron simsii HOM05D008140 ORTHO05D009650 2.1e-15 86.7 108 50.0
Sp4g21180 Schrenkiella parvula HOM05D008140 ORTHO05D009650 2.1e-15 86.7 171 38.0
THA.LOC104803169 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 8.2e-15 84.7 181 37.0
THA.LOC104803183 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 8.2e-15 84.7 104 49.0
AL4G36090 Arabidopsis lyrata HOM05D008140 ORTHO05D009650 1.1e-14 84.3 178 36.5
CANSAT56G1901 Cannabis sativa HOM05D008140 ORTHO05D009650 1.1e-14 84.3 154 39.0
Carub.0004s2081 Capsella rubella HOM05D008140 ORTHO05D009650 2.4e-14 83.2 189 38.6
AT2G38790 Arabidopsis thaliana HOM05D008140 ORTHO05D009650 5.3e-14 82.0 192 35.9
Nitab4.5_0012334g0020 Nicotiana tabacum HOM05D009634 ORTHO05D009650 9.0e-14 81.3 97 52.6
BolC4t22473H Brassica oleracea HOM05D008140 ORTHO05D009650 2.0e-13 80.1 165 38.8
Oeu026565.1 Olea europaea HOM05D009634 ORTHO05D009650 2.6e-13 79.7 119 46.2
Nitab4.5_0002878g0050 Nicotiana tabacum HOM05D009634 ORTHO05D009650 5.8e-13 78.6 101 45.5
BcaC02g12023 Brassica carinata HOM05D008140 ORTHO05D009650 7.6e-13 78.2 163 38.7
C04p08800 Brassica napus HOM05D008140 ORTHO05D009650 7.6e-13 78.2 163 38.7
CARHR133500 Cardamine hirsuta HOM05D008140 ORTHO05D009650 7.6e-13 78.2 177 37.9
A05p07360 Brassica napus HOM05D008140 ORTHO05D009650 1.7e-12 77.0 160 38.8
BraA05t19701Z Brassica rapa HOM05D008140 ORTHO05D009650 1.7e-12 77.0 160 38.8
Nitab4.5_0001850g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 1.7e-12 77.0 122 39.3
Oeu059859.1 Olea europaea HOM05D009634 ORTHO05D009650 1.7e-12 77.0 119 44.5
BolC3t14947H Brassica oleracea HOM05D008140 ORTHO05D009650 2.2e-12 76.6 174 36.8
C03p25590 Brassica napus HOM05D008140 ORTHO05D009650 2.9e-12 76.3 175 36.6
Nitab4.5_0002878g0060 Nicotiana tabacum HOM05D009634 ORTHO05D009650 2.9e-12 76.3 97 51.5
Peaxi162Scf00244g00074 Petunia axillaris HOM05D009634 ORTHO05D009650 3.8e-12 75.9 94 42.6
Peaxi162Scf00244g00075 Petunia axillaris HOM05D009634 ORTHO05D009650 3.8e-12 75.9 125 40.0
Nitab4.5_0002878g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 6.5e-12 75.1 107 41.1
BcaB02g09155 Brassica carinata HOM05D008140 ORTHO05D009650 8.4e-12 74.7 160 36.9
BcaB02g09156 Brassica carinata HOM05D008140 ORTHO05D009650 8.4e-12 74.7 160 36.9
A05p07380 Brassica napus HOM05D008140 ORTHO05D009650 8.4e-12 74.7 161 37.9
BraA05t19703Z Brassica rapa HOM05D008140 ORTHO05D009650 8.4e-12 74.7 161 37.9
Solyc11g007520.1 Solanum lycopersicum HOM05D009634 ORTHO05D009650 1.1e-11 74.3 102 39.2
PGSC0003DMG400027311 Solanum tuberosum HOM05D009634 ORTHO05D009650 5.5e-11 72.0 102 38.2
Cpa.g.sc19.24 Carica papaya HOM05D008140 ORTHO05D009650 1.2e-10 70.9 105 45.7
Sopen11g003360 Solanum pennellii HOM05D009634 ORTHO05D009650 2.1e-10 70.1 117 38.5
PGSC0003DMG400027312 Solanum tuberosum HOM05D009634 ORTHO05D009650 5.1e-09 65.5 93 38.7
SalBow6G5252 Salvia bowleyana HOM05D009634 ORTHO05D009650 4.3e-08 62.4 113 42.5
C03p25610 Brassica napus HOM05D008140 ORTHO05D009650 9.7e-08 61.2 101 41.6
BolC3t14949H Brassica oleracea HOM05D008140 ORTHO05D009650 9.7e-08 61.2 101 41.6
CAN.G135.81 Capsicum annuum HOM05D009634 ORTHO05D009650 9.7e-08 61.2 96 36.5
SalBow6G2478 Salvia bowleyana HOM05D009634 ORTHO05D009650 1.3e-07 60.8 117 41.0
PGR142G1448 Punica granatum HOM05D008140 ORTHO05D009650 1.6e-07 60.5 101 41.6
TAR636G1773 Trochodendron aralioides HOM05D013129 ORTHO05D015736 1.6e-07 60.5 104 42.3
QL04p041658 Quercus lobata HOM05D013129 ORTHO05D015736 2.2e-07 60.1 169 36.7
Migut.F00890 Erythranthe guttata HOM05D009634 ORTHO05D009650 2.8e-07 59.7 97 40.2
SGA_v2.0_scaffold13G06494 Striga asiatica HOM05D009634 ORTHO05D009650 2.8e-07 59.7 110 38.2
QL04p042000 Quercus lobata HOM05D013129 ORTHO05D015736 3.7e-07 59.3 169 36.7
QL04p042057 Quercus lobata HOM05D013129 ORTHO05D015736 3.7e-07 59.3 161 34.8
A03p21630 Brassica napus HOM05D008140 ORTHO05D009650 4.8e-07 58.9 101 43.6
BraA03t11398Z Brassica rapa HOM05D008140 ORTHO05D009650 4.8e-07 58.9 101 43.6
AUR62029245 Chenopodium quinoa HOM05D052203 ORTHO05D044055 4.8e-07 58.9 145 31.0
Aqoxy2G01366 Aquilegia oxysepala HOM05D008140 ORTHO05D009650 8.2e-07 58.2 148 30.4
QL04p042031 Quercus lobata HOM05D013129 ORTHO05D015736 1.4e-06 57.4 169 36.1
AUR62034220 Chenopodium quinoa HOM05D052203 ORTHO05D044055 1.8e-06 57.0 92 35.9
QL04p041649 Quercus lobata HOM05D013129 ORTHO05D015736 3.1e-06 56.2 162 33.3
QL04p041992 Quercus lobata HOM05D013129 ORTHO05D015736 3.1e-06 56.2 162 33.3
Ah.04g163690 Amaranthus hybridus HOM05D009634 ORTHO05D009650 4.1e-06 55.8 116 33.6
Migut.F00892 Erythranthe guttata HOM05D009634 ORTHO05D009650 6.9e-06 55.1 96 38.5
SalBow6G4194 Salvia bowleyana HOM05D009634 ORTHO05D009650 6.9e-06 55.1 121 36.4


User provided reference genes

Program Settings