Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 6.3e-84 314.3 187 100.0
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.4e-51 206.1 105 99.0
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 1.6e-50 203.4 104 98.1
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.2e-45 187.2 104 87.5
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 2.0e-42 176.4 103 84.5
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 2.7e-42 176.0 103 83.5
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 1.3e-36 157.1 104 74.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 4.9e-36 155.2 104 73.1
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 6.4e-36 154.8 104 74.0
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 5.4e-35 151.8 101 74.3
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 5.4e-35 151.8 101 74.3
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 5.4e-35 151.8 101 74.3
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.0e-34 149.8 101 72.3
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 4.6e-34 148.7 99 72.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 4.6e-34 148.7 99 73.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 5.9e-34 148.3 116 63.8
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 7.8e-34 147.9 98 71.4
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 7.8e-34 147.9 129 61.2
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.3e-33 147.1 100 70.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.3e-33 147.1 100 70.0
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 5.0e-33 145.2 104 71.2
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 5.0e-33 145.2 104 71.2
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 5.0e-33 145.2 99 71.7
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 8.6e-33 144.4 104 66.3
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 8.6e-33 144.4 104 67.3
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 8.6e-33 144.4 104 67.3
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 8.6e-33 144.4 104 67.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 1.1e-32 144.1 103 68.0
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 1.1e-32 144.1 99 69.7
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.1e-32 144.1 103 66.0
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 1.5e-32 143.7 99 72.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 1.5e-32 143.7 99 70.7
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 1.5e-32 143.7 104 66.3
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 2.5e-32 142.9 100 69.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 5.6e-32 141.7 99 68.7
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 9.5e-32 141.0 103 67.0
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.2e-31 140.6 112 62.5
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 1.6e-31 140.2 104 67.3
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 2.1e-31 139.8 99 67.7
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 3.6e-31 139.0 99 68.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 3.6e-31 139.0 99 67.7
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 3.6e-31 139.0 99 67.7
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 3.6e-31 139.0 99 67.7
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 6.2e-31 138.3 104 66.3
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 6.2e-31 138.3 106 64.2
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 8.0e-31 137.9 99 66.7
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 1.0e-30 137.5 104 66.3
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.4e-30 137.1 104 64.4
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.3e-30 136.3 103 64.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.1e-30 136.0 103 64.1
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.1e-30 136.0 103 64.1
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.1e-30 136.0 99 66.7
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 5.2e-30 135.2 97 66.0
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 5.2e-30 135.2 141 52.5
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 6.8e-30 134.8 99 64.6
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 6.8e-30 134.8 98 68.4
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.5e-29 133.7 97 67.0
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 2.0e-29 133.3 99 64.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 2.0e-29 133.3 92 71.7
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 2.6e-29 132.9 97 66.0
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 3.4e-29 132.5 97 66.0
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 3.4e-29 132.5 97 63.9
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 3.4e-29 132.5 97 66.0
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 4.4e-29 132.1 97 66.0
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 5.8e-29 131.7 97 66.0
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 5.8e-29 131.7 97 66.0
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 5.8e-29 131.7 97 66.0
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 5.8e-29 131.7 97 66.0
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 7.5e-29 131.3 99 62.6
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 2.9e-28 129.4 99 64.6
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 4.9e-28 128.6 99 63.6
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 4.9e-28 128.6 99 63.6
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 6.4e-28 128.3 97 63.9
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 6.4e-28 128.3 87 70.1
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 8.3e-28 127.9 102 60.8
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 4.1e-27 125.6 99 61.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 9.2e-27 124.4 88 67.0
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.2e-26 124.0 105 57.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 7.8e-26 121.3 99 61.6
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 6.6e-25 118.2 91 61.5
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 6.6e-25 118.2 88 63.6
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.3e-24 115.5 87 60.9
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.6e-23 113.6 94 58.5
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 2.1e-23 113.2 87 62.1
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 2.6e-21 106.3 87 60.9
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.6e-21 106.3 87 60.9
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.1e-19 100.9 71 64.8
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.9e-19 100.1 75 62.7
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 7.1e-19 98.2 98 52.0
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.0e-17 94.4 77 62.3
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 1.3e-17 94.0 62 72.6
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 1.7e-17 93.6 82 57.3
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 2.3e-17 93.2 62 71.0
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 2.3e-17 93.2 62 71.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 3.0e-17 92.8 62 72.6
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 5.6e-16 88.6 62 66.1
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 3.6e-15 85.9 97 45.4
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 4.7e-15 85.5 74 55.4
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 8.1e-15 84.7 65 60.0
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.1e-14 84.3 64 65.6
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.1e-14 84.3 68 64.7
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 1.3e-12 77.4 53 66.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.9e-12 75.5 59 59.3
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 5.4e-11 72.0 49 69.4
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 6.6e-09 65.1 93 39.8
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.5e-08 63.9 71 49.3
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 2.1e-07 60.1 93 35.5
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 1.1e-06 57.8 38 65.8
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.4e-06 57.4 53 50.9
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 2.4e-06 56.6 95 35.8
Sabra16G0250800 Salix brachista HOM05D007153 ORTHO05D009081 3.1e-06 56.2 44 59.1
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 4.0e-06 55.8 94 36.2
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 5.2e-06 55.5 94 37.2
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 8.9e-06 54.7 89 38.2


User provided reference genes

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