Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 2501.9 1269 100.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 2110.1 1272 84.0
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1958.7 1254 78.9
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1951.8 1267 77.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1943.7 1274 78.9
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1937.9 1255 78.4
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1923.3 1252 78.6
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1922.5 1265 77.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1920.6 1254 77.2
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1911.3 1266 76.5
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1894.4 1265 76.2
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1892.1 1301 74.3
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1891.7 1274 75.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1891.7 1254 76.6
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1890.9 1273 74.9
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1890.9 1274 75.1
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1883.6 1259 76.7
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1878.6 1266 75.8
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1877.8 1258 75.4
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1876.7 1253 76.2
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1868.2 1262 74.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1862.0 1268 74.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1862.0 1264 75.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1860.9 1268 74.3
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1859.7 1263 74.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1852.8 1250 75.5
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1847.8 1262 74.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1840.5 1253 74.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1838.5 1326 71.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1837.4 1256 74.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1836.6 1270 73.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1836.2 1266 73.9
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1828.5 1271 73.1
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1823.1 1254 73.4
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1820.1 1257 73.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1813.5 1256 73.6
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1812.3 1260 73.0
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1807.7 1328 70.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1800.0 1256 71.8
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1796.9 1291 71.1
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1792.3 1257 72.2
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1790.8 1252 72.2
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1786.5 1260 71.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1782.3 1261 74.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1780.4 1254 71.5
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1771.1 1253 71.6
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1762.3 1255 71.4
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1760.3 1261 71.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1760.0 1258 71.8
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1759.2 1302 69.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1758.8 1327 68.7
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1757.7 1254 70.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1752.6 1256 71.0
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1751.9 1256 70.6
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1746.9 1258 70.1
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1745.3 1253 70.8
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1743.4 1253 69.9
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1741.5 1254 69.9
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1741.1 1022 85.7
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1738.4 1254 69.9
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1737.6 1184 74.8
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1737.2 1261 70.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1736.9 1256 70.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1265 68.9
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1723.0 1270 68.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1718.4 1252 70.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1717.6 1254 70.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1716.8 1230 71.7
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1709.9 1254 70.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1708.7 1254 70.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1277 68.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1706.0 1310 67.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1704.9 1253 69.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1703.0 1263 70.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1682.2 1252 68.9
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1679.5 1183 72.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1675.2 1206 72.3
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1671.8 1251 68.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1654.0 1248 68.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1248 67.9
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1643.2 1251 67.7
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1642.9 1251 67.7
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1267 66.9
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1621.7 1188 69.3
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1604.3 1251 66.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1593.2 1296 64.4
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1256 64.8
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1009 78.3
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1207 67.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1560.0 1168 68.1
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1531.9 1254 64.0
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1517.3 1270 61.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1472.2 1283 60.2
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1470.7 885 85.9
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1454.1 1255 60.3
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1413.7 1257 59.2
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1350.9 1041 67.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1265.4 888 71.8
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1227.2 1251 55.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1188.3 948 66.4
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1148.7 972 60.9
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1142.9 1259 48.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1137.5 1267 48.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1095.1 794 69.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 0.0e+00 1090.5 664 82.4
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 6.1e-308 1061.2 817 66.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 6.8e-291 1004.6 1195 47.4
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 3.3e-261 906.0 1205 43.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.8e-225 786.2 554 72.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.1e-219 765.0 1286 37.2
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 3.7e-196 689.9 620 58.4
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 2.0e-189 667.5 1406 34.1
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.4e-189 666.4 604 57.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.7e-186 657.1 465 73.8
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.6e-178 631.3 494 67.8
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 6.4e-172 609.4 1274 33.1
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 3.4e-165 587.0 660 50.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.3e-145 521.2 276 96.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.8e-132 477.2 703 44.4
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.2e-131 473.8 333 70.6
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.8e-126 458.4 1155 30.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.5e-107 394.8 245 84.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.0e-97 360.9 343 53.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.7e-93 346.7 275 63.6
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.7e-93 346.7 275 63.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 3.2e-91 341.3 230 77.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 7.3e-83 313.5 200 78.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.1e-73 281.6 237 61.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.1e-65 255.0 179 74.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 6.4e-63 247.3 174 71.8
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.5e-59 233.4 161 75.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.8e-49 200.7 159 63.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.1e-42 179.1 104 78.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 2.3e-36 159.1 111 72.1
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.0e-36 158.7 225 45.8
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.1e-35 156.8 1213 22.2
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 8.1e-34 150.6 91 82.4
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.8e-32 144.4 120 65.0
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.6e-26 126.3 67 94.0
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.5e-24 119.8 115 53.0
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.6e-24 117.5 115 51.3
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.3e-19 102.1 161 41.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 6.3e-18 97.8 158 38.0
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.8e-17 96.3 211 30.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.4e-17 95.9 95 50.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.6e-16 92.4 62 74.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.3e-15 90.1 117 45.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 2.2e-15 89.4 91 52.7
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.2e-15 89.4 151 37.1
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 7.2e-14 84.3 126 41.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 6.3e-10 71.2 258 24.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.1e-09 70.5 104 39.4
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 4.5e-08 65.1 47 70.2
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 2.2e-07 62.8 40 75.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.8e-07 62.0 71 46.5
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 9.4e-06 57.4 50 58.0
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 9.4e-06 57.4 92 42.4
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 9.4e-06 57.4 100 38.0
GSVIVG01029815001 Vitis vinifera HOM05D004478 ORTHO05D016211 9.4e-06 57.4 33 78.8


User provided reference genes

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