Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 4.0e-168 594.7 311 100.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.8e-131 473.0 264 92.8
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 3.0e-123 445.7 260 86.5
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.2e-117 425.6 259 83.4
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.8e-107 393.3 264 76.1
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 6.7e-107 391.3 264 76.1
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.1e-106 390.6 257 75.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 7.4e-106 387.9 264 75.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.3e-105 387.1 260 74.2
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.1e-104 384.0 257 74.3
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.8e-104 383.3 261 73.6
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 5.3e-104 381.7 260 75.4
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.2e-103 380.6 261 72.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.2e-103 380.6 260 73.8
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.2e-103 380.6 261 73.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 3.4e-103 379.0 260 75.4
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.5e-103 378.6 260 73.1
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 5.9e-103 378.3 260 75.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.2e-102 376.3 262 71.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.9e-102 375.9 262 74.4
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.9e-102 375.9 260 73.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 6.5e-102 374.8 260 73.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 8.5e-102 374.4 261 74.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.1e-101 374.0 258 73.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.4e-101 373.6 260 72.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.4e-101 373.6 260 73.5
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.6e-100 370.2 258 72.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.6e-100 369.0 260 73.1
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.1e-100 368.2 276 69.2
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.4e-99 367.1 269 72.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.3e-99 366.3 265 70.6
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 3.0e-99 365.9 260 71.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 8.8e-99 364.4 261 70.5
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.1e-98 364.0 261 73.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.5e-98 363.6 298 64.1
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.6e-98 362.8 263 70.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-98 362.5 266 71.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-98 361.7 266 71.1
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.4e-98 361.3 266 70.7
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.7e-97 360.1 263 69.6
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.7e-97 359.0 263 69.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.7e-97 359.0 263 69.6
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.8e-97 358.6 263 68.4
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.4e-96 357.1 252 71.8
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.4e-96 357.1 260 68.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.8e-96 356.7 263 69.6
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.4e-96 356.3 261 70.9
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 4.1e-96 355.5 263 68.1
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.1e-96 355.5 266 70.3
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 5.3e-96 355.1 260 68.5
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.1e-96 354.4 263 69.2
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.5e-95 353.6 260 68.5
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.3e-94 350.5 265 67.5
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-94 350.5 263 67.3
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.7e-94 350.1 264 68.9
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.9e-94 349.4 252 69.0
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 6.1e-92 341.7 262 67.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 8.0e-92 341.3 263 67.7
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-91 340.5 276 66.7
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.3e-91 339.7 262 67.6
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.0e-91 339.3 235 72.8
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 6.7e-91 338.2 264 68.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 6.7e-91 338.2 262 66.4
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 8.8e-91 337.8 260 67.3
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.5e-90 337.0 325 57.2
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.3e-90 335.9 258 67.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.4e-90 335.5 219 75.8
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 4.4e-90 335.5 236 72.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.2e-89 333.2 258 66.3
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.3e-89 331.6 260 66.2
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 8.2e-89 331.3 264 66.7
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.1e-88 330.9 254 66.9
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.1e-88 330.9 254 67.3
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.8e-88 330.1 253 68.4
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 9.1e-88 327.8 260 65.0
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.6e-87 327.0 263 65.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.9e-86 322.8 247 68.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.9e-86 322.8 258 63.2
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.9e-85 320.1 260 65.0
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.2e-85 319.3 252 65.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 4.7e-84 315.5 260 64.6
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.8e-83 313.5 260 64.2
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 6.8e-83 311.6 258 63.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.2e-81 306.6 250 64.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-80 303.5 253 62.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.3e-78 297.4 256 60.5
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.9e-77 293.5 266 59.8
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.7e-76 289.7 261 62.1
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.0e-75 287.7 235 62.1
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.2e-74 284.3 189 74.6
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.3e-73 280.8 181 76.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.4e-72 277.3 247 59.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.3e-70 270.0 260 54.2
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.2e-69 265.8 258 57.8
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.3e-67 260.0 277 53.4
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-66 256.9 194 67.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.4e-64 250.8 251 54.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 3.6e-60 236.1 235 57.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 2.4e-56 223.4 262 47.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 6.6e-54 215.3 151 72.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 2.5e-53 213.4 237 52.7
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.3e-51 206.8 262 43.9
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 7.5e-50 201.8 188 59.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 4.1e-48 196.1 225 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.4e-48 195.7 257 41.6
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.3e-43 180.3 350 37.4
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.6e-39 167.5 132 64.4
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 8.6e-38 161.8 108 76.9
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.6e-38 161.8 115 77.4
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-37 160.6 115 76.5
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-34 151.4 146 56.2
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 2.1e-31 140.6 84 83.3
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.3e-30 137.9 84 81.0
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-28 130.2 102 65.7
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.1e-27 126.7 121 52.1
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.0e-26 124.0 104 63.5
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 7.6e-26 122.1 109 62.4
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 3.8e-25 119.8 268 32.5
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.4e-24 117.9 136 47.8
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.9e-24 117.5 272 32.0
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.4e-24 117.1 111 59.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.7e-23 113.6 66 81.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 2.7e-23 113.6 150 43.3
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.3e-21 105.5 117 53.8
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.6e-20 104.4 102 55.9
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-19 100.9 135 44.4
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 5.3e-19 99.4 104 57.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.2e-17 94.0 69 62.3
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 4.9e-17 92.8 58 82.8
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 4.3e-13 79.7 64 62.5
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 5.6e-13 79.3 70 57.1
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 5.6e-13 79.3 64 59.4
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.8e-11 74.3 98 44.9
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.3e-09 68.2 68 55.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.4e-08 64.7 77 46.8
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-08 63.5 50 62.0


User provided reference genes

Program Settings