Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 8.7e-54 213.4 108 100.0
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 3.8e-49 198.0 108 94.4
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 5.5e-48 194.1 108 93.5
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.5e-34 149.4 102 75.5
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 2.0e-34 149.1 108 70.4
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.9e-33 145.2 104 73.1
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 8.5e-33 143.7 109 70.6
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 1.9e-32 142.5 104 73.1
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 3.2e-32 141.7 104 70.2
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 4.2e-32 141.4 104 69.2
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 6.1e-31 137.5 104 67.3
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.0e-30 136.7 101 67.3
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.3e-30 135.6 101 66.3
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 3.0e-30 135.2 119 60.5
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 3.0e-30 135.2 108 67.6
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 6.7e-30 134.0 100 70.0
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 1.1e-29 133.3 108 65.7
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 1.9e-29 132.5 97 70.1
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.5e-29 132.1 104 59.6
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 3.3e-29 131.7 104 66.3
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 4.3e-29 131.3 97 69.1
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 7.4e-29 130.6 100 65.0
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 7.4e-29 130.6 92 70.7
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 7.4e-29 130.6 108 63.9
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 9.7e-29 130.2 99 61.6
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 9.7e-29 130.2 108 64.8
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-28 129.8 99 68.7
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-28 129.8 99 68.7
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.3e-28 129.8 106 66.0
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 1.3e-28 129.8 99 65.7
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.7e-28 129.4 102 66.7
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.7e-28 129.4 108 63.0
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.2e-28 129.0 96 64.6
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 2.8e-28 128.6 101 67.3
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.7e-28 128.3 108 62.0
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 3.7e-28 128.3 108 62.0
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 3.7e-28 128.3 105 66.7
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 3.7e-28 128.3 127 55.9
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 3.7e-28 128.3 109 60.6
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 3.7e-28 128.3 104 61.5
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 6.3e-28 127.5 105 64.8
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.1e-27 126.7 108 62.0
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 1.8e-27 125.9 105 61.0
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 1.8e-27 125.9 105 64.8
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 2.4e-27 125.6 100 64.0
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 2.4e-27 125.6 119 61.3
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.3e-27 124.4 119 61.3
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 9.1e-27 123.6 106 61.3
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 9.1e-27 123.6 110 59.1
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 9.1e-27 123.6 96 68.8
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 1.2e-26 123.2 88 71.6
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 1.5e-26 122.9 103 62.1
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.5e-26 122.9 104 58.7
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 1.5e-26 122.9 96 67.7
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 2.0e-26 122.5 110 59.1
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 2.6e-26 122.1 110 59.1
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 4.5e-26 121.3 108 55.6
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 5.9e-26 120.9 106 62.3
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.7e-25 119.4 98 62.2
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 3.8e-25 118.2 80 67.5
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 5.0e-25 117.9 115 57.4
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 5.0e-25 117.9 126 57.1
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 5.0e-25 117.9 94 62.8
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.0e-25 117.9 110 56.4
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 5.0e-25 117.9 109 62.4
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 6.5e-25 117.5 126 56.3
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 6.5e-25 117.5 110 56.4
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 8.5e-25 117.1 97 60.8
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 8.5e-25 117.1 98 63.3
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.1e-24 116.7 86 62.8
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.1e-24 116.7 86 62.8
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 1.4e-24 116.3 94 62.8
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.9e-24 115.9 115 59.1
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.9e-24 115.9 107 59.8
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 3.2e-24 115.2 110 56.4
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 3.2e-24 115.2 110 56.4
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 4.2e-24 114.8 101 60.4
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 5.5e-24 114.4 105 59.0
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 7.2e-24 114.0 80 71.2
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.2e-23 113.2 79 69.6
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 3.6e-23 111.7 104 55.8
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 6.1e-23 110.9 102 57.8
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 7.9e-23 110.5 78 67.9
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 7.9e-23 110.5 104 54.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.4e-22 109.8 98 55.1
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 1.4e-22 109.8 102 57.8
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.4e-22 109.8 93 58.1
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 1.8e-22 109.4 91 63.7
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.8e-22 109.4 75 73.3
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 2.3e-22 109.0 81 65.4
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 3.0e-22 108.6 105 55.2
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.0e-22 108.6 104 53.8
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 3.0e-22 108.6 106 53.8
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.0e-22 108.6 79 67.1
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 3.9e-22 108.2 110 52.7
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 3.9e-22 108.2 110 52.7
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 5.1e-22 107.8 108 56.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 5.1e-22 107.8 79 67.1
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 8.8e-22 107.1 106 54.7
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 2.0e-21 105.9 108 50.9
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.0e-21 105.9 94 57.4
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.4e-21 104.8 102 52.9
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 7.4e-21 104.0 101 53.5
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 7.4e-21 104.0 101 53.5
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 7.4e-21 104.0 101 53.5
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 1.3e-20 103.2 107 50.5
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 1.7e-20 102.8 104 51.9
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 1.7e-20 102.8 91 57.1
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 2.2e-20 102.4 103 52.4
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 2.2e-20 102.4 100 56.0
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 6.3e-20 100.9 113 47.8
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 6.3e-20 100.9 93 57.0
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 1.1e-19 100.1 99 52.5
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 1.1e-19 100.1 101 57.4
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 1.1e-19 100.1 111 48.6
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 1.4e-19 99.8 74 63.5
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 9.1e-19 97.1 104 49.0
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 9.1e-19 97.1 105 56.2
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 2.0e-18 95.9 82 61.0
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 4.5e-18 94.7 59 74.6
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 1.3e-17 93.2 79 62.0
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.4e-14 83.2 72 52.8
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 3.9e-14 81.6 64 54.7
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.4e-11 73.2 83 44.6
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 2.4e-11 72.4 60 53.3
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 3.1e-11 72.0 50 76.0
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 4.5e-10 68.2 48 72.9
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 7.7e-10 67.4 74 41.9
Ca_10674_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 6.1e-07 57.8 54 63.0


User provided reference genes

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