Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011153 Carpinus fangiana HOM05D006102 ORTHO05D007550 0.0e+00 1107.4 578 100.0
Cfa011148 Carpinus fangiana HOM05D006102 ORTHO05D007550 9.9e-221 770.4 570 76.7
Cfa011150 Carpinus fangiana HOM05D006102 ORTHO05D007550 7.1e-219 764.2 615 71.5
Cfa011155 Carpinus fangiana HOM05D006102 ORTHO05D007550 2.4e-198 696.0 560 71.6
QL04p037175 Quercus lobata HOM05D006102 ORTHO05D007550 3.3e-160 569.3 598 57.2
CiPaw.14G025500 Carya illinoinensis HOM05D006102 ORTHO05D007550 1.3e-148 530.8 618 52.4
Prupe.2G137200 Prunus persica HOM05D006102 ORTHO05D007550 1.2e-120 438.0 584 46.6
Haze_02710 Corylus avellana HOM05D006102 ORTHO05D007550 1.9e-115 420.6 317 76.3
RcHm_v2.0_Chr1g0349071 Rosa chinensis HOM05D006102 ORTHO05D007550 1.5e-107 394.4 585 44.4
Sabra14G0046000 Salix brachista HOM05D006102 ORTHO05D007550 1.6e-106 391.0 587 44.1
MD07G1115100 Malus domestica HOM05D006102 ORTHO05D007550 4.7e-106 389.4 582 45.2
Dinv43669 Davidia involucrata HOM05D006102 ORTHO05D007550 1.1e-105 388.3 595 43.5
FAN03G1880 Fragaria x ananassa HOM05D006102 ORTHO05D007550 2.6e-104 383.6 569 44.3
Potri.014G066000 Populus trichocarpa HOM05D006102 ORTHO05D007550 3.4e-104 383.3 581 44.4
FAN10G3138 Fragaria x ananassa HOM05D006102 ORTHO05D007550 9.9e-104 381.7 566 44.3
FAN06G2296 Fragaria x ananassa HOM05D006102 ORTHO05D007550 1.3e-103 381.3 549 45.5
FAN06G2175 Fragaria x ananassa HOM05D006102 ORTHO05D007550 2.9e-103 380.2 549 45.4
FAN10G3898 Fragaria x ananassa HOM05D006102 ORTHO05D007550 2.7e-101 373.6 577 43.2
CANSAT56G2478 Cannabis sativa HOM05D006102 ORTHO05D007550 1.3e-100 371.3 560 43.9
Duzib138G0330 Durio zibethinus HOM05D006102 ORTHO05D007550 3.0e-100 370.2 586 42.0
CSS0002341 Camellia sinensis var. sinensis HOM05D006102 ORTHO05D007550 3.1e-97 360.1 589 41.1
TWI59G0915 Tripterygium wilfordii HOM05D006102 ORTHO05D007550 1.7e-95 354.4 589 40.2
COL.COLO4_12485 Corchorus olitorius HOM05D006102 ORTHO05D007550 2.4e-94 350.5 542 43.4
Lj3g0012088 Lotus japonicus HOM05D006102 ORTHO05D007550 2.4e-94 350.5 583 40.7
TAR375G0254 Trochodendron aralioides HOM05D006102 ORTHO05D007550 4.2e-94 349.7 616 39.1
Thecc.01G384200 Theobroma cacao HOM05D006102 ORTHO05D007550 9.3e-94 348.6 565 41.1
Gohir.D11G083100 Gossypium hirsutum HOM05D006102 ORTHO05D007550 1.2e-93 348.2 592 41.0
Gorai.007G088700 Gossypium raimondii HOM05D006102 ORTHO05D007550 2.1e-93 347.4 592 40.9
Ciclev10018476m.g Citrus clementina HOM05D006102 ORTHO05D007550 4.6e-93 346.3 598 41.8
Gohir.A11G078500 Gossypium hirsutum HOM05D006102 ORTHO05D007550 1.9e-86 324.3 555 41.1
Lalb_Chr07g0190291 Lupinus albus HOM05D006102 ORTHO05D007550 1.6e-85 321.2 587 38.8
Nn1g00999 Nelumbo nucifera HOM05D006102 ORTHO05D007550 1.6e-85 321.2 594 37.4
Ca_19854_v3 Cicer arietinum L. HOM05D006102 ORTHO05D007550 1.3e-82 311.6 587 37.8
TPR.G4985 Trifolium pratense HOM05D006102 ORTHO05D007550 4.0e-81 306.6 589 37.4
Rhsim07G0031600 Rhododendron simsii HOM05D006102 ORTHO05D007550 9.0e-81 305.4 589 38.5
Glyma.03G032900 Glycine max HOM05D006102 ORTHO05D007550 3.8e-79 300.1 521 38.6
vmacro13446 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 3.8e-79 300.1 584 39.2
Haze_02708 Corylus avellana HOM05D006102 ORTHO05D007550 1.9e-78 297.7 192 82.8
CsaV3_3G007350 Cucumis sativus L. HOM05D006102 ORTHO05D007550 9.3e-78 295.4 584 36.3
arahy.Tifrunner.gnm1.ann1.W52PF9 Arachis hypogaea HOM05D006102 ORTHO05D007550 3.3e-75 287.0 570 36.1
GSVIVG01018154001 Vitis vinifera HOM05D006102 ORTHO05D007550 1.6e-74 284.6 507 38.9
Lj7A537G47 Lonicera japonica HOM05D006102 ORTHO05D007550 6.2e-74 282.7 494 38.3
PGR004G2833 Punica granatum HOM05D006102 ORTHO05D007550 2.4e-73 280.8 583 37.2
arahy.Tifrunner.gnm1.ann1.1V3LDQ Arachis hypogaea HOM05D006102 ORTHO05D007550 3.1e-73 280.4 570 35.8
Phvul.010G071832 Phaseolus vulgaris HOM05D006102 ORTHO05D007550 9.0e-73 278.9 467 39.4
Eucgr.D02494 Eucalyptus grandis HOM05D006102 ORTHO05D007550 2.2e-71 274.2 350 46.6
Medtr4g027425 Medicago truncatula HOM05D006102 ORTHO05D007550 2.2e-71 274.2 637 33.8
THA.LOC104801481 Tarenaya hassleriana HOM05D006102 ORTHO05D007550 2.1e-69 267.7 444 39.4
CARHR248110 Cardamine hirsuta HOM05D006102 ORTHO05D007550 1.8e-68 264.6 441 40.4
Atru.chr5.236 Acer truncatum HOM05D006102 ORTHO05D007550 2.2e-66 257.7 191 66.5
AT4G00060 Arabidopsis thaliana HOM05D006102 ORTHO05D007550 2.2e-66 257.7 475 38.5
AL6G53450 Arabidopsis lyrata HOM05D006102 ORTHO05D007550 3.7e-66 256.9 439 39.2
DCAR_015878 Daucus carota HOM05D006102 ORTHO05D007550 8.2e-66 255.8 589 34.3
Cfa011156 Carpinus fangiana HOM05D006102 ORTHO05D007550 1.0e-63 248.8 146 89.7
Aa31LG5G130 Aethionema arabicum HOM05D006102 ORTHO05D007550 1.1e-62 245.4 268 49.6
Peaxi162Scf00803g00223 Petunia axillaris HOM05D006102 ORTHO05D007550 1.1e-62 245.4 343 44.6
BcaB01g02181 Brassica carinata HOM05D006102 ORTHO05D007550 8.8e-60 235.7 511 35.0
Nitab4.5_0011151g0030 Nicotiana tabacum HOM05D006102 ORTHO05D007550 1.1e-59 235.3 289 47.1
Sopen01g036600 Solanum pennellii HOM05D006102 ORTHO05D007550 3.3e-59 233.8 312 45.2
A03p27130 Brassica napus HOM05D006102 ORTHO05D007550 5.7e-59 233.0 492 36.4
Cpa.g.sc49.147 Carica papaya HOM05D006102 ORTHO05D007550 7.4e-59 232.6 206 55.8
Carub.0006s3716 Capsella rubella HOM05D006102 ORTHO05D007550 2.2e-58 231.1 538 34.2
BraA03t11926Z Brassica rapa HOM05D006102 ORTHO05D007550 4.8e-58 229.9 492 36.0
Sp6g00130 Schrenkiella parvula HOM05D006102 ORTHO05D007550 8.2e-58 229.2 448 35.7
Solyc01g090860.3 Solanum lycopersicum HOM05D006102 ORTHO05D007550 1.1e-57 228.8 446 36.8
Sed0013724 Sechium edule HOM05D006102 ORTHO05D007550 1.8e-57 228.0 587 33.4
Sc02g0002820 Simmondsia chinensis HOM05D006102 ORTHO05D007550 9.1e-57 225.7 570 35.1
BcaC01g04890 Brassica carinata HOM05D006102 ORTHO05D007550 2.6e-56 224.2 497 35.2
C03p32590 Brassica napus HOM05D006102 ORTHO05D007550 2.6e-56 224.2 497 35.2
Thhalv10028362m.g Eutrema salsugineum HOM05D006102 ORTHO05D007550 2.6e-56 224.2 483 35.6
BolC3t15598H Brassica oleracea HOM05D006102 ORTHO05D007550 3.4e-56 223.8 497 35.2
VMungo0331G1545 Vigna mungo HOM05D006102 ORTHO05D007550 3.8e-55 220.3 191 58.1
Nitab4.5_0000859g0180 Nicotiana tabacum HOM05D006102 ORTHO05D007550 5.0e-55 219.9 377 40.1
PGSC0003DMG401026018 Solanum tuberosum HOM05D006102 ORTHO05D007550 8.5e-55 219.2 183 59.6
Lsat_1_v5_gn_3_129280 Lactuca sativa HOM05D006102 ORTHO05D007550 2.5e-54 217.6 215 53.0
SGA_v2.0_scaffold11G05526 Striga asiatica HOM05D006102 ORTHO05D007550 1.6e-53 214.9 516 37.6
Oeu032185.2 Olea europaea HOM05D006102 ORTHO05D007550 7.9e-53 212.6 354 40.1
Aqoxy7G00755 Aquilegia oxysepala HOM05D006102 ORTHO05D007550 1.0e-52 212.2 352 39.5
Migut.N01612 Erythranthe guttata HOM05D006102 ORTHO05D007550 1.8e-52 211.5 492 35.8
MSTRG.28175 Avicennia marina HOM05D006102 ORTHO05D007550 6.7e-52 209.5 391 41.2
CAN.G1872.3 Capsicum annuum HOM05D006102 ORTHO05D007550 8.8e-52 209.1 433 35.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.7e-51 206.5 541 33.8
HanXRQChr03g0093281 Helianthus annuus HOM05D006102 ORTHO05D007550 1.3e-47 195.3 563 32.0
AUR62004162 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.9e-47 194.1 541 33.3
AUR62013660 Chenopodium quinoa HOM05D006102 ORTHO05D007550 1.4e-46 191.8 561 32.4
PSO017G2680 Papaver somniferum HOM05D006102 ORTHO05D007550 1.2e-45 188.7 586 31.6
PSO170G5751 Papaver somniferum HOM05D006102 ORTHO05D007550 5.2e-44 183.3 585 30.9
Cc02_g24460 Coffea canephora HOM05D006102 ORTHO05D007550 2.6e-43 181.0 434 34.6
Hund27378 Selenicereus undatus HOM05D006102 ORTHO05D007550 7.4e-43 179.5 467 35.1
QL93p0363_0004 Quercus lobata HOM05D006102 ORTHO05D007550 2.4e-41 174.5 181 60.2
unitig_748.g7113 Utricularia gibba HOM05D006102 ORTHO05D007550 1.2e-37 162.2 514 31.1
Manes.05G049400 Manihot esculenta HOM05D006102 ORTHO05D007550 2.7e-37 161.0 391 33.0
EL10Ac1g00837 Beta vulgaris HOM05D006102 ORTHO05D007550 4.7e-37 160.2 528 30.9
Ah.05g173810 Amaranthus hybridus HOM05D006102 ORTHO05D007550 2.6e-35 154.5 604 29.3
SEGI_10795 Sequoiadendron giganteum HOM05D006102 ORTHO05D007550 3.1e-33 147.5 289 36.3
Hma1.2p1_0072F.1_g038360 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 5.0e-31 140.2 217 39.6
HPP92_005330 Vanilla planifolia HOM05D006102 ORTHO05D007550 2.3e-28 131.3 198 39.4
ATR0317G095 Amborella trichopoda HOM05D006102 ORTHO05D007550 2.2e-26 124.8 430 30.2
FvH4_7g11041 Fragaria vesca HOM05D006102 ORTHO05D007550 1.6e-24 118.6 343 32.7
Psat0s3685g0040 Pisum sativum HOM05D006102 ORTHO05D007550 1.3e-18 99.0 395 28.4
Oeu005825.4 Olea europaea HOM05D006102 ORTHO05D007550 1.7e-18 98.6 180 39.4
Actinidia12183 Actinidia chinensis HOM05D006102 ORTHO05D007550 8.3e-18 96.3 397 28.7
Mapoly0072s0019 Marchantia polymorpha HOM05D006102 ORTHO05D007550 2.4e-17 94.7 255 27.5
Pp3c16_11310 Physcomitrium patens HOM05D006102 ORTHO05D007550 1.6e-16 92.0 221 29.9
VMungo0331G0964 Vigna mungo HOM05D006102 ORTHO05D007550 1.6e-16 92.0 409 26.7
Hma1.2p1_0072F.1_g038370 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 2.2e-10 71.6 279 27.2
ClCG05G000200 Citrullus lanatus HOM05D006102 ORTHO05D007550 4.9e-10 70.5 388 27.6
MELO3C005957.2 Cucumis melo HOM05D006102 ORTHO05D007550 1.2e-08 65.9 388 26.3


User provided reference genes

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