Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011149 Carpinus fangiana HOM05D000115 ORTHO05D043377 3.9e-81 304.7 148 100.0
CiPaw.02G139100 Carya illinoinensis HOM05D000115 ORTHO05D003511 7.3e-27 124.4 117 59.8
QL05p010459 Quercus lobata HOM05D000115 ORTHO05D003511 6.2e-26 121.3 72 81.9
Haze_15977 Corylus avellana HOM05D000115 ORTHO05D003511 1.7e-20 103.2 89 66.3
Ca_01214_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 8.1e-18 94.4 62 67.7
VMungo1080G1576 Vigna mungo HOM05D000115 ORTHO05D003511 1.8e-17 93.2 76 57.9
Glyma.13G348300 Glycine max HOM05D000115 ORTHO05D003511 3.1e-17 92.4 74 58.1
arahy.Tifrunner.gnm1.ann1.FAWA0L Arachis hypogaea HOM05D000115 ORTHO05D003511 6.8e-17 91.3 66 60.6
Prupe.3G047600 Prunus persica HOM05D000115 ORTHO05D003511 8.9e-17 90.9 76 59.2
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 1.2e-16 90.5 72 58.3
CsaV3_5G026460 Cucumis sativus L. HOM05D000115 ORTHO05D003511 1.2e-16 90.5 72 58.3
MD09G1191500 Malus domestica HOM05D000115 ORTHO05D003511 1.2e-16 90.5 145 37.2
Sed0000024 Sechium edule HOM05D000115 ORTHO05D003511 1.2e-16 90.5 65 61.5
arahy.Tifrunner.gnm1.ann1.G5TW2N Arachis hypogaea HOM05D000115 ORTHO05D003511 1.5e-16 90.1 66 60.6
ClCG09G019990 Citrullus lanatus HOM05D000115 ORTHO05D003511 1.5e-16 90.1 61 65.6
Lj3g0016356 Lotus japonicus HOM05D000115 ORTHO05D003511 2.6e-16 89.4 64 60.9
Eucgr.F03141 Eucalyptus grandis HOM05D000115 ORTHO05D003511 3.0e-12 75.9 131 36.6
FAN02G0337 Fragaria x ananassa HOM05D000115 ORTHO05D003511 8.6e-12 74.3 125 37.6
CANSAT56G4126 Cannabis sativa HOM05D000115 ORTHO05D003511 7.3e-11 71.2 86 46.5
Aa31LG3G16220 Aethionema arabicum HOM05D000115 ORTHO05D014770 3.6e-10 68.9 63 52.4
CANSAT56G1622 Cannabis sativa HOM05D000115 ORTHO05D003511 6.2e-10 68.2 99 41.4
AT5G10900 Arabidopsis thaliana HOM05D000115 ORTHO05D014770 8.1e-10 67.8 70 47.1
A02p00740 Brassica napus HOM05D000115 ORTHO05D014770 1.1e-09 67.4 63 50.8
CARHR202390 Cardamine hirsuta HOM05D000115 ORTHO05D014770 1.4e-09 67.0 70 47.1
Medtr2g099710 Medicago truncatula HOM05D000115 ORTHO05D003511 1.4e-09 67.0 59 54.2
THA.LOC104814989 Tarenaya hassleriana HOM05D000115 ORTHO05D014770 1.4e-09 67.0 63 52.4
CANSAT25G0936 Cannabis sativa HOM05D000115 ORTHO05D043377 2.4e-09 66.2 63 52.4
FvH4_6g33720 Fragaria vesca HOM05D000115 ORTHO05D003511 2.4e-09 66.2 91 46.2
FAN05G4063 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.4e-09 66.2 91 46.2
FAN09G3652 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.4e-09 66.2 91 46.2
RcHm_v2.0_Chr2g0143611 Rosa chinensis HOM05D000115 ORTHO05D003511 3.1e-09 65.9 91 44.0
Sp6g32590 Schrenkiella parvula HOM05D000115 ORTHO05D014770 3.1e-09 65.9 70 45.7
Carub.0006s0939 Capsella rubella HOM05D000115 ORTHO05D014770 4.0e-09 65.5 70 47.1
BcaNung01902 Brassica carinata HOM05D000115 ORTHO05D006733 5.2e-09 65.1 63 49.2
Thhalv10012994m.g Eutrema salsugineum HOM05D000115 ORTHO05D014770 5.2e-09 65.1 60 53.3
AL6G21460 Arabidopsis lyrata HOM05D000115 ORTHO05D014770 6.8e-09 64.7 70 45.7
BraA02t05059Z Brassica rapa HOM05D000115 ORTHO05D014770 6.8e-09 64.7 70 45.7
Psat5g291480 Pisum sativum HOM05D000115 ORTHO05D003511 6.8e-09 64.7 84 41.7
C02p04740 Brassica napus HOM05D000115 ORTHO05D014770 3.4e-08 62.4 72 43.1
Rhsim12G0012700 Rhododendron simsii HOM05D000115 ORTHO05D003511 3.4e-08 62.4 91 40.7
BcaC03g13339 Brassica carinata HOM05D000115 ORTHO05D014770 5.8e-08 61.6 70 44.3
RcHm_v2.0_Chr2g0096721 Rosa chinensis HOM05D000115 ORTHO05D003511 5.8e-08 61.6 83 43.4
Hund03578 Selenicereus undatus HOM05D000115 ORTHO05D003511 5.8e-08 61.6 82 43.9
BolC2t06433H Brassica oleracea HOM05D000115 ORTHO05D014770 7.6e-08 61.2 70 44.3
FAN23G0607 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.9e-07 59.3 83 43.4
FAN23G1295 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.9e-07 59.3 83 43.4
FAN26G1982 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.9e-07 59.3 83 43.4
FAN28G0496 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.9e-07 59.3 83 43.4
EL10Ac6g14705 Beta vulgaris HOM05D000115 ORTHO05D003511 4.9e-07 58.5 82 40.2
Cpa.g.sc6.351 Carica papaya HOM05D000115 ORTHO05D003511 4.9e-07 58.5 83 42.2
Ciclev10025593m.g Citrus clementina HOM05D000115 ORTHO05D003511 4.9e-07 58.5 84 42.9
Oeu045755.1 Olea europaea HOM05D000115 ORTHO05D003511 4.9e-07 58.5 86 41.9
Ah.02g123230 Amaranthus hybridus HOM05D000115 ORTHO05D003511 8.4e-07 57.8 82 40.2
Rhsim10G0191000 Rhododendron simsii HOM05D000115 ORTHO05D003511 8.4e-07 57.8 84 38.1
TAR376G0183 Trochodendron aralioides HOM05D000115 ORTHO05D003511 1.1e-06 57.4 85 38.8
vmacro20274 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.1e-06 57.4 85 38.8
FAN19G3058 Fragaria x ananassa HOM05D000115 ORTHO05D003511 1.4e-06 57.0 83 42.2
Potri.001G196600 Populus trichocarpa HOM05D000115 ORTHO05D050563 1.4e-06 57.0 81 43.2
vmacro16980 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.4e-06 57.0 68 44.1
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 1.4e-06 57.0 85 40.0
FvH4_1g09940 Fragaria vesca HOM05D000115 ORTHO05D003511 1.9e-06 56.6 83 41.0
Sc16g0004370 Simmondsia chinensis HOM05D000115 ORTHO05D003511 1.9e-06 56.6 82 39.0
THA.LOC104826459 Tarenaya hassleriana HOM05D000115 ORTHO05D003511 1.9e-06 56.6 84 42.9
Sabra01G0143300 Salix brachista HOM05D000115 ORTHO05D050563 2.4e-06 56.2 60 46.7
Sp2g26930 Schrenkiella parvula HOM05D000115 ORTHO05D003511 2.4e-06 56.2 83 42.2
BcaNung04638 Brassica carinata HOM05D000115 ORTHO05D003511 3.2e-06 55.8 83 42.2
Potri.001G456600 Populus trichocarpa HOM05D000115 ORTHO05D003511 3.2e-06 55.8 84 41.7
Solyc02g082230.4 Solanum lycopersicum HOM05D000115 ORTHO05D003511 3.2e-06 55.8 86 40.7
AL697U10020 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 4.2e-06 55.5 84 44.0
AL8G41100 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 4.2e-06 55.5 84 44.0
CARHR277770 Cardamine hirsuta HOM05D000115 ORTHO05D003511 4.2e-06 55.5 84 44.0
Thhalv10004310m.g Eutrema salsugineum HOM05D000115 ORTHO05D003511 4.2e-06 55.5 84 44.0
MD02G1108000 Malus domestica HOM05D000115 ORTHO05D003511 4.2e-06 55.5 83 41.0
A09p08440 Brassica napus HOM05D000115 ORTHO05D003511 5.4e-06 55.1 83 41.0
BraA09t36494Z Brassica rapa HOM05D000115 ORTHO05D003511 5.4e-06 55.1 83 41.0
Carub.0008s2464 Capsella rubella HOM05D000115 ORTHO05D003511 5.4e-06 55.1 83 42.2
MD13G1054400 Malus domestica HOM05D000115 ORTHO05D003511 5.4e-06 55.1 84 41.7
Prupe.7G187800 Prunus persica HOM05D000115 ORTHO05D003511 5.4e-06 55.1 83 39.8
Thecc.01G001600 Theobroma cacao HOM05D000115 ORTHO05D003511 5.4e-06 55.1 83 39.8
C09p09550 Brassica napus HOM05D000115 ORTHO05D003511 7.1e-06 54.7 83 41.0
BolC9t53866H Brassica oleracea HOM05D000115 ORTHO05D003511 7.1e-06 54.7 83 41.0
AUR62003714 Chenopodium quinoa HOM05D000115 ORTHO05D003511 7.1e-06 54.7 82 39.0
Nn6g31606 Nelumbo nucifera HOM05D000115 ORTHO05D003511 7.1e-06 54.7 83 38.6
Peaxi162Scf00981g00421 Petunia axillaris HOM05D000115 ORTHO05D003511 7.1e-06 54.7 86 40.7
Potri.011G145300 Populus trichocarpa HOM05D000115 ORTHO05D003511 7.1e-06 54.7 84 40.5
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 7.1e-06 54.7 84 40.5
Sabra11G0130400 Salix brachista HOM05D000115 ORTHO05D003511 7.1e-06 54.7 83 38.6
SEGI_41226 Sequoiadendron giganteum HOM05D000115 ORTHO05D003511 7.1e-06 54.7 81 38.3
Migut.K01156 Erythranthe guttata HOM05D000115 ORTHO05D003511 9.2e-06 54.3 87 42.5
FvH4_1g09700 Fragaria vesca HOM05D000115 ORTHO05D003511 9.2e-06 54.3 83 39.8


User provided reference genes

Program Settings