Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011069 Carpinus fangiana HOM05D004530 ORTHO05D005839 1.7e-82 309.3 158 100.0
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 1.7e-34 149.8 81 96.3
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 2.2e-29 132.9 83 83.1
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 2.0e-27 126.3 82 79.3
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 7.5e-22 107.8 90 65.6
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 6.4e-21 104.8 124 51.6
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 5.4e-20 101.7 83 67.5
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 5.4e-20 101.7 114 50.0
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 1.2e-19 100.5 80 70.0
Cpa.g.sc22.80 Carica papaya HOM05D004530 ORTHO05D005839 1.6e-19 100.1 81 66.7
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 1.6e-19 100.1 84 63.1
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 1.0e-18 97.4 84 60.7
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 1.0e-18 97.4 76 65.8
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.3e-18 97.1 82 62.2
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 2.3e-18 96.3 78 66.7
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 2.3e-18 96.3 80 66.2
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 2.3e-18 96.3 80 66.2
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.3e-18 96.3 81 63.0
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 2.3e-18 96.3 133 50.4
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 3.0e-18 95.9 81 63.0
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 3.9e-18 95.5 83 63.9
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 3.9e-18 95.5 88 61.4
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 5.0e-18 95.1 81 61.7
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 5.0e-18 95.1 112 50.0
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 5.0e-18 95.1 81 61.7
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 6.6e-18 94.7 83 63.9
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 6.6e-18 94.7 82 62.2
Hma1.2p1_0041F.1_g025340 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.1e-17 94.0 86 65.1
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 1.1e-17 94.0 86 65.1
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 1.1e-17 94.0 83 63.9
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 1.5e-17 93.6 122 49.2
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 1.9e-17 93.2 127 47.2
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 1.9e-17 93.2 83 60.2
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 3.3e-17 92.4 82 61.0
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 3.3e-17 92.4 83 56.6
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 4.3e-17 92.0 81 60.5
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 4.3e-17 92.0 84 59.5
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 9.5e-17 90.9 118 48.3
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 9.5e-17 90.9 90 57.8
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 1.2e-16 90.5 85 55.3
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 1.6e-16 90.1 139 45.3
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 2.1e-16 89.7 84 58.3
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 2.1e-16 89.7 81 59.3
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.1e-16 89.7 77 59.7
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 2.8e-16 89.4 128 46.1
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 6.2e-16 88.2 84 58.3
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 8.1e-16 87.8 115 48.7
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 1.1e-15 87.4 77 61.0
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 1.1e-15 87.4 87 56.3
Ah.05g174020 Amaranthus hybridus HOM05D004530 ORTHO05D005839 1.8e-15 86.7 72 65.3
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 2.3e-15 86.3 89 55.1
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 3.1e-15 85.9 77 58.4
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 4.0e-15 85.5 82 57.3
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 4.0e-15 85.5 84 54.8
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 5.2e-15 85.1 80 60.0
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 6.8e-15 84.7 124 41.1
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 6.8e-15 84.7 108 51.9
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 3.4e-14 82.4 73 58.9
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 5.8e-14 81.6 77 55.8
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 5.8e-14 81.6 85 55.3
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.3e-13 80.5 85 54.1
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 1.3e-13 80.5 76 56.6
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.7e-13 80.1 77 54.5
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 8.3e-13 77.8 76 56.6
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 4.1e-12 75.5 85 52.9
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.1e-12 75.5 76 55.3
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 7.1e-12 74.7 70 57.1
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 9.2e-12 74.3 83 51.8
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 9.2e-12 74.3 88 47.7
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 2.1e-11 73.2 56 64.3
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.5e-11 72.4 76 53.9
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.5e-11 72.4 76 53.9
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 6.0e-11 71.6 86 44.2
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 6.0e-11 71.6 69 56.5
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 1.0e-10 70.9 86 47.7
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 1.7e-10 70.1 83 53.0
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 2.3e-10 69.7 80 48.8
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 5.1e-10 68.6 80 47.5
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 6.6e-10 68.2 80 46.2
Peaxi162Scf00475g00418 Petunia axillaris HOM05D004530 ORTHO05D005839 6.6e-10 68.2 77 48.1
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 8.6e-10 67.8 80 50.0
Cc00_g35630 Coffea canephora HOM05D004530 ORTHO05D005839 2.5e-09 66.2 88 46.6
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 3.3e-09 65.9 80 48.8
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 4.3e-09 65.5 82 47.6
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 4.3e-09 65.5 80 50.0
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 2.8e-08 62.8 116 35.3
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 3.6e-08 62.4 51 64.7
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.6e-08 62.4 84 44.0
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 1.4e-07 60.5 116 37.1
Lj7A546T15 Lonicera japonica HOM05D004530 ORTHO05D005839 2.3e-07 59.7 88 40.9
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 5.2e-07 58.5 79 46.8
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 5.2e-07 58.5 79 46.8
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 5.2e-07 58.5 79 46.8
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 5.2e-07 58.5 79 46.8
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 1.2e-06 57.4 93 43.0
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 2.0e-06 56.6 116 33.6
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 2.0e-06 56.6 106 33.0
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 2.6e-06 56.2 78 44.9
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 9.9e-06 54.3 75 45.3


User provided reference genes

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