Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 8.2e-241 836.6 421 100.0
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 2.6e-218 761.9 421 92.9
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 4.4e-162 575.1 416 71.9
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.8e-118 430.3 351 64.7
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 4.3e-117 425.6 346 63.3
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 3.7e-116 422.5 347 63.7
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.7e-113 413.7 347 61.4
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 2.3e-110 403.3 342 61.7
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 3.0e-110 402.9 345 61.7
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.3e-109 399.4 349 60.2
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 7.4e-109 398.3 285 69.5
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 2.2e-108 396.7 342 59.1
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 2.8e-108 396.4 421 53.0
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 3.7e-108 396.0 349 59.6
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 4.8e-108 395.6 345 60.3
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.1e-107 394.4 349 59.6
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 2.4e-107 393.3 421 51.5
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 6.9e-107 391.7 349 60.2
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 2.0e-106 390.2 347 60.8
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.7e-106 388.3 349 59.6
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.7e-105 387.1 349 59.3
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 3.8e-105 386.0 426 51.2
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 3.8e-105 386.0 426 50.9
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 5.0e-105 385.6 320 63.4
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 1.4e-104 384.0 340 57.9
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.4e-104 384.0 345 58.8
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 3.2e-104 382.9 352 58.5
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.2e-103 380.9 416 51.7
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 2.1e-103 380.2 356 57.3
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 3.6e-103 379.4 352 58.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 3.6e-103 379.4 347 59.7
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 8.0e-103 378.3 346 58.4
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.8e-100 369.0 439 48.7
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 5.9e-98 362.1 428 46.3
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 2.2e-97 360.1 428 46.7
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.5e-97 358.6 355 54.4
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.5e-97 358.6 361 54.3
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.5e-96 356.7 348 56.3
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 1.6e-95 354.0 347 53.6
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 3.6e-95 352.8 283 59.4
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 8.0e-95 351.7 430 46.7
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.3e-94 350.1 255 67.1
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.3e-94 350.1 405 49.4
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 5.2e-94 349.0 208 79.3
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 6.7e-94 348.6 327 57.8
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 3.3e-93 346.3 283 61.5
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 8.2e-92 341.7 283 58.3
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 1.4e-91 340.9 342 57.0
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 4.1e-91 339.3 341 53.7
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 7.0e-91 338.6 283 57.6
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 9.1e-91 338.2 369 49.9
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 3.5e-90 336.3 353 51.8
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 3.5e-90 336.3 340 53.8
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 4.5e-90 335.9 346 53.5
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 5.9e-90 335.5 284 58.5
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 5.9e-90 335.5 412 45.9
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.0e-89 334.7 495 42.8
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 1.7e-89 334.0 409 50.6
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.5e-88 330.9 312 56.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 1.5e-88 330.9 368 49.2
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 1.9e-88 330.5 350 54.6
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 5.5e-88 328.9 415 46.7
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 9.4e-88 328.2 366 51.4
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 2.1e-87 327.0 337 52.8
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 6.1e-87 325.5 348 52.6
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 3.0e-86 323.2 326 55.8
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 5.2e-86 322.4 329 53.8
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 6.8e-86 322.0 422 44.3
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.4e-83 314.3 349 51.9
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 4.5e-82 309.3 369 49.6
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.0e-81 308.1 344 50.3
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 1.1e-80 304.7 283 53.7
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 1.5e-80 304.3 285 55.1
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.1e-79 300.4 284 54.2
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 4.7e-79 299.3 349 45.8
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 1.0e-78 298.1 365 47.4
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 2.6e-77 293.5 303 52.5
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.2e-76 290.4 302 51.3
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 7.8e-74 282.0 351 47.3
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 1.9e-72 277.3 257 56.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 4.3e-72 276.2 317 49.8
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 7.3e-72 275.4 369 43.4
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 2.6e-69 266.9 333 45.6
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 9.8e-69 265.0 249 57.8
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.7e-68 263.1 430 39.3
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 1.3e-65 254.6 235 58.7
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 7.3e-64 248.8 421 39.0
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 7.3e-64 248.8 369 45.5
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 4.0e-62 243.0 320 46.2
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 1.3e-60 238.0 318 43.7
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 5.1e-57 226.1 372 40.6
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 1.1e-56 224.9 601 31.6
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 3.6e-55 219.9 251 51.4
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 2.2e-52 210.7 316 40.2
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.7e-49 201.1 169 59.8
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 3.4e-45 186.8 220 47.3
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 1.3e-44 184.9 185 49.7
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.9e-44 183.7 322 34.8
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 9.9e-37 158.7 104 76.0
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 8.4e-36 155.6 165 47.3
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-28 129.4 375 27.7
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 3.7e-23 113.6 219 36.5
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 6.2e-23 112.8 114 52.6
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 3.1e-22 110.5 119 47.9
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 2.6e-21 107.5 166 34.9
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 2.9e-20 104.0 117 47.0
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 3.8e-20 103.6 113 50.4
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.2e-13 82.0 235 26.8
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 2.0e-13 81.3 379 24.8
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.2e-10 72.0 61 54.1
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.1e-10 71.2 44 68.2
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 2.7e-10 70.9 97 44.3
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 2.7e-10 70.9 37 86.5
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 5.1e-09 66.6 60 58.3
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 1.5e-08 65.1 233 23.6
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 5.7e-08 63.2 51 62.7
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 5.3e-06 56.6 212 28.8


User provided reference genes

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