Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011047 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.4e-97 359.0 206 100.0
Cfa005586 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.3e-62 242.3 198 65.2
Cfa005587 Carpinus fangiana HOM05D000448 ORTHO05D000291 4.0e-47 192.2 203 56.7
Cfa021119 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.8e-37 159.5 181 49.7
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 1.5e-22 110.5 147 49.0
Cfa005588 Carpinus fangiana HOM05D000448 ORTHO05D000291 6.6e-18 95.1 104 50.0
Haze_02875 Corylus avellana HOM05D000448 ORTHO05D000291 1.6e-16 90.5 112 50.0
CiPaw.06G009500 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.5e-14 84.0 104 45.2
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-14 83.2 93 51.6
Manes.05G056601 Manihot esculenta HOM05D000448 ORTHO05D000291 5.8e-14 82.0 91 49.5
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 7.5e-14 81.6 93 50.5
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 7.5e-14 81.6 126 41.3
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.2e-13 80.1 128 38.3
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 4.9e-13 79.0 85 51.8
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 8.3e-13 78.2 161 33.5
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 1.1e-12 77.8 93 46.2
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.4e-12 77.4 104 43.3
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.4e-12 77.4 104 43.3
Sabra14G0036000 Salix brachista HOM05D000448 ORTHO05D000291 1.4e-12 77.4 155 32.3
Dinv44044 Davidia involucrata HOM05D000448 ORTHO05D000291 2.4e-12 76.6 94 48.9
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.2e-12 76.3 149 35.6
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 4.1e-12 75.9 148 35.8
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.4e-12 75.5 104 42.3
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.4e-12 75.5 84 50.0
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 7.0e-12 75.1 96 42.7
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 7.0e-12 75.1 136 35.3
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 7.0e-12 75.1 128 37.5
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 9.2e-12 74.7 96 41.7
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 9.2e-12 74.7 96 41.7
GSVIVG01018305001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.2e-11 74.3 124 37.9
GSVIVG01018306001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.2e-11 74.3 108 36.1
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.6e-11 73.9 84 48.8
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 2.0e-11 73.6 96 39.6
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 2.7e-11 73.2 96 46.9
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.5e-11 72.8 47 63.8
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 3.5e-11 72.8 150 34.7
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.5e-11 72.8 150 34.7
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 3.5e-11 72.8 93 43.0
Potri.014G050600 Populus trichocarpa HOM05D000448 ORTHO05D000291 4.6e-11 72.4 150 33.3
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 6.0e-11 72.0 96 38.5
Eucgr.D01263 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.0e-11 72.0 94 42.6
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 6.0e-11 72.0 128 34.4
Oeu011248.1 Olea europaea HOM05D000448 ORTHO05D000291 6.0e-11 72.0 88 40.9
Potri.014G050700 Populus trichocarpa HOM05D000448 ORTHO05D000291 7.8e-11 71.6 160 33.1
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 7.8e-11 71.6 96 45.8
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.0e-10 71.2 108 40.7
PGR004G0201 Punica granatum HOM05D000448 ORTHO05D000291 1.0e-10 71.2 93 43.0
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.0e-10 71.2 128 36.7
Prupe.2G121500 Prunus persica HOM05D000448 ORTHO05D000291 1.7e-10 70.5 96 38.5
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 1.7e-10 70.5 96 45.8
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.3e-10 70.1 91 38.5
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.3e-10 70.1 110 38.2
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-10 70.1 46 60.9
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 3.9e-10 69.3 97 37.1
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 5.0e-10 68.9 96 33.3
Nn7g38168 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.6e-10 68.6 117 36.8
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 6.6e-10 68.6 84 40.5
CANSAT25G1737 Cannabis sativa HOM05D000448 ORTHO05D000291 8.6e-10 68.2 93 41.9
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 8.6e-10 68.2 94 37.2
CiPaw.06G009000 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.1e-09 67.8 152 34.9
Cfa017263 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.5e-09 67.4 45 62.2
Nn1g06105 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.5e-09 67.4 75 41.3
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 1.9e-09 67.0 94 37.2
QL04p028865 Quercus lobata HOM05D000448 ORTHO05D000291 1.9e-09 67.0 166 31.3
Potri.014G050900 Populus trichocarpa HOM05D000448 ORTHO05D000291 2.5e-09 66.6 95 42.1
Gohir.D12G096850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 3.3e-09 66.2 77 50.6
Nn1g06104 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.3e-09 65.9 96 38.5
AUR62007589 Chenopodium quinoa HOM05D000480 ORTHO05D000313 5.6e-09 65.5 94 35.1
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 5.6e-09 65.5 104 30.8
CiPaw.13G024700 Carya illinoinensis HOM05D000448 ORTHO05D000291 7.3e-09 65.1 127 34.6
AUR62007588 Chenopodium quinoa HOM05D000480 ORTHO05D000313 7.3e-09 65.1 94 36.2
Gohir.D12G101100 Gossypium hirsutum HOM05D000448 ORTHO05D000291 9.5e-09 64.7 132 34.1
Gorai.008G110100 Gossypium raimondii HOM05D000448 ORTHO05D000291 9.5e-09 64.7 132 34.1
Sabra14G0038100 Salix brachista HOM05D000448 ORTHO05D000291 9.5e-09 64.7 105 40.0
AUR62004076 Chenopodium quinoa HOM05D000480 ORTHO05D000313 1.2e-08 64.3 94 35.1
MBI14_g45558_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.6e-08 63.9 82 43.9
Sabra14G0035900 Salix brachista HOM05D000448 ORTHO05D000291 1.6e-08 63.9 93 44.1
Gohir.A12G098000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.1e-08 63.5 127 33.9
Potri.001G443600 Populus trichocarpa HOM05D000448 ORTHO05D000291 2.1e-08 63.5 93 46.2
Potri.001G444300 Populus trichocarpa HOM05D000448 ORTHO05D000291 2.1e-08 63.5 93 46.2
Sabra14G0038200 Salix brachista HOM05D000448 ORTHO05D000291 3.6e-08 62.8 146 32.2
Potri.014G050532 Populus trichocarpa HOM05D000448 ORTHO05D000291 4.7e-08 62.4 93 44.1
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 4.7e-08 62.4 48 62.5
MBI14_g39031_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 6.2e-08 62.0 80 41.2
Potri.014G050800 Populus trichocarpa HOM05D000448 ORTHO05D000291 6.2e-08 62.0 116 36.2
Thecc.01G399100 Theobroma cacao HOM05D000448 ORTHO05D000291 8.1e-08 61.6 131 33.6
Thecc.01G399400 Theobroma cacao HOM05D000448 ORTHO05D000291 8.1e-08 61.6 133 32.3
QL04p028761 Quercus lobata HOM05D000448 ORTHO05D000291 1.1e-07 61.2 147 29.9
Thecc.06G183100 Theobroma cacao HOM05D000448 ORTHO05D000291 1.1e-07 61.2 86 38.4
Dinv39594 Davidia involucrata HOM05D000448 ORTHO05D000291 2.3e-07 60.1 60 50.0
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 3.1e-07 59.7 101 33.7
Rhsim01G0141700 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.1e-07 59.7 96 38.5
AUR62043589 Chenopodium quinoa HOM05D000448 ORTHO05D000291 4.0e-07 59.3 61 45.9
Sabra14G0038000 Salix brachista HOM05D000448 ORTHO05D000291 4.0e-07 59.3 78 46.2
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 5.2e-07 58.9 42 64.3
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.2e-07 58.9 85 42.4
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.2e-07 58.9 85 42.4
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 5.2e-07 58.9 79 40.5
CiPaw.16G039100 Carya illinoinensis HOM05D000448 ORTHO05D000291 6.8e-07 58.5 98 38.8
Eucgr.L02828 Eucalyptus grandis HOM05D000448 ORTHO05D000291 8.9e-07 58.2 54 53.7
Rhsim12G0049500 Rhododendron simsii HOM05D000448 ORTHO05D000291 8.9e-07 58.2 91 40.7
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 8.9e-07 58.2 100 33.0
EL10Ac6g15537 Beta vulgaris HOM05D000480 ORTHO05D000313 1.2e-06 57.8 86 31.4
AUR62044748 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.2e-06 57.8 40 57.5
PSO063G0367 Papaver somniferum HOM05D000480 ORTHO05D000313 1.2e-06 57.8 80 38.8
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 1.2e-06 57.8 100 35.0
Thecc.01G398400 Theobroma cacao HOM05D000448 ORTHO05D000291 1.2e-06 57.8 131 32.8
MD12G1231200 Malus domestica HOM05D000480 ORTHO05D000313 1.5e-06 57.4 101 33.7
CSS0013072 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.0e-06 57.0 89 37.1
CSS0045842 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.0e-06 57.0 89 37.1
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 2.0e-06 57.0 42 61.9
Cfa012319 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.0e-06 57.0 88 37.5
THA.LOC104799245 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 2.6e-06 56.6 85 38.8
EL10Ac2g03996 Beta vulgaris HOM05D000448 ORTHO05D000291 3.4e-06 56.2 70 40.0
EL10Ac2g03997 Beta vulgaris HOM05D000448 ORTHO05D000291 3.4e-06 56.2 37 59.5
Dinv39592 Davidia involucrata HOM05D000448 ORTHO05D000291 3.4e-06 56.2 54 53.7
Manes.01G088000 Manihot esculenta HOM05D000480 ORTHO05D000313 3.4e-06 56.2 79 41.8
Phvul.008G049700 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 3.4e-06 56.2 83 32.5
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 3.4e-06 56.2 100 34.0
Thecc.01G398200 Theobroma cacao HOM05D000448 ORTHO05D000291 3.4e-06 56.2 77 42.9
EL10Ac2g03995 Beta vulgaris HOM05D000448 ORTHO05D000291 5.8e-06 55.5 69 36.2
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 5.8e-06 55.5 100 34.0
Nn7g38091 Nelumbo nucifera HOM05D000448 ORTHO05D000291 5.8e-06 55.5 38 65.8
QL04p028789 Quercus lobata HOM05D000448 ORTHO05D000291 5.8e-06 55.5 38 63.2
Actinidia29315 Actinidia chinensis HOM05D000448 ORTHO05D000291 7.5e-06 55.1 91 35.2
AT4G11000 Arabidopsis thaliana HOM05D000480 ORTHO05D000313 7.5e-06 55.1 56 50.0
BolC7t45364H Brassica oleracea HOM05D000480 ORTHO05D000313 7.5e-06 55.1 50 52.0
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 7.5e-06 55.1 100 33.0
Cfa010311 Carpinus fangiana HOM05D000480 ORTHO05D000313 9.9e-06 54.7 45 51.1
Cfa012320 Carpinus fangiana HOM05D000480 ORTHO05D000313 9.9e-06 54.7 113 30.1
Eucgr.C00702 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.9e-06 54.7 73 34.2
RcHm_v2.0_Chr2g0133631 Rosa chinensis HOM05D000448 ORTHO05D000291 9.9e-06 54.7 57 49.1
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 9.9e-06 54.7 133 31.6


User provided reference genes

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