Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 9.2e-69 263.5 135 100.0
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.7e-67 259.2 132 100.0
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.2e-61 238.4 136 89.7
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.6e-60 236.1 135 88.1
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.6e-57 224.9 139 84.2
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 3.6e-57 224.9 136 83.1
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 4.0e-56 221.5 136 82.4
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.0e-55 219.2 136 80.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 2.6e-55 218.8 136 80.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 5.8e-55 217.6 137 81.0
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 7.5e-55 217.2 136 80.9
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.5e-55 217.2 136 80.9
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.3e-54 216.5 136 78.7
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.3e-54 216.5 137 81.0
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.2e-54 215.7 138 76.1
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-54 214.9 136 80.1
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 3.7e-54 214.9 136 78.7
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 4.9e-54 214.5 137 81.0
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 4.9e-54 214.5 136 80.1
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 6.4e-54 214.2 136 78.7
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 6.4e-54 214.2 136 77.2
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 6.4e-54 214.2 136 77.9
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 8.3e-54 213.8 136 79.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 8.3e-54 213.8 136 80.1
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-53 213.4 136 80.1
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.1e-53 213.4 136 80.1
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.1e-53 213.4 137 80.3
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.4e-53 212.2 137 79.6
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 5.4e-53 211.1 137 75.9
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 7.0e-53 210.7 136 76.5
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 9.2e-53 210.3 137 78.8
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 9.2e-53 210.3 138 76.1
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.6e-52 209.5 139 74.8
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.7e-52 208.8 138 74.6
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 2.7e-52 208.8 135 75.6
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.5e-52 208.4 138 78.3
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 4.6e-52 208.0 136 77.9
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 6.0e-52 207.6 138 76.8
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 7.8e-52 207.2 137 74.5
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 7.8e-52 207.2 136 77.9
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.3e-51 206.5 136 75.0
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.3e-51 206.5 135 74.1
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 1.7e-51 206.1 136 75.7
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.3e-51 205.7 139 72.7
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 3.9e-51 204.9 137 76.6
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 3.9e-51 204.9 134 75.4
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 5.0e-51 204.5 140 76.4
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.0e-51 204.5 136 75.7
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.6e-51 204.1 139 78.4
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 8.6e-51 203.8 137 74.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.1e-50 203.4 136 74.3
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.5e-50 203.0 138 76.1
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.9e-50 202.6 139 76.3
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 7.3e-50 200.7 140 75.0
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 7.3e-50 200.7 137 74.5
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 9.5e-50 200.3 136 73.5
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 9.5e-50 200.3 136 74.3
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 9.5e-50 200.3 135 71.9
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.2e-49 199.9 137 73.0
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.2e-49 199.9 136 75.0
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.2e-49 199.9 138 73.2
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.2e-49 199.9 137 71.5
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.6e-49 199.5 136 75.0
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 2.8e-49 198.7 137 75.2
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 2.8e-49 198.7 137 75.2
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.6e-49 198.4 139 71.9
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.1e-49 197.2 137 75.2
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.4e-48 196.4 136 72.1
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.3e-48 195.7 137 71.5
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 4.0e-48 194.9 138 73.2
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 4.0e-48 194.9 139 70.5
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 4.0e-48 194.9 139 72.7
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.2e-48 194.5 135 74.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.2e-47 193.4 138 74.6
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.5e-47 193.0 139 70.5
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 1.5e-47 193.0 137 72.3
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 2.0e-47 192.6 139 71.2
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 2.6e-47 192.2 138 70.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 4.4e-47 191.4 137 70.1
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 4.4e-47 191.4 137 70.1
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 4.4e-47 191.4 137 70.1
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 4.4e-47 191.4 137 70.1
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 5.8e-47 191.0 135 71.9
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.7e-46 189.5 140 69.3
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.2e-46 189.1 140 70.7
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 69.6
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 2.9e-46 188.7 136 72.8
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 2.9e-46 188.7 136 70.6
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 4.9e-46 188.0 138 68.8
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 6.4e-46 187.6 137 67.9
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 8.3e-46 187.2 138 73.2
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.1e-45 186.8 138 68.8
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.1e-45 186.8 140 72.1
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 1.9e-45 186.0 118 81.4
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.7e-44 182.2 138 68.8
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 7.8e-44 180.6 124 74.2
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 7.8e-44 180.6 141 67.4
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 7.8e-44 180.6 168 60.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.0e-43 180.3 154 64.9
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-43 179.9 129 69.0
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.3e-43 179.9 135 69.6
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.7e-43 179.5 136 62.5
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.0e-43 178.7 136 67.6
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.0e-43 178.7 106 80.2
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.9e-43 178.3 136 66.2
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 6.6e-43 177.6 126 72.2
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 67.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.5e-42 175.6 143 62.9
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.3e-42 174.9 209 52.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 3.6e-41 171.8 143 60.8
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 6.2e-41 171.0 104 83.7
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.4e-40 169.9 138 63.8
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.0e-40 168.3 124 72.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 5.2e-40 167.9 106 80.2
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 6.8e-40 167.5 118 76.3
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.5e-39 166.4 107 74.8
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 4.4e-39 164.9 144 62.5
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.2e-38 162.5 112 75.0
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 90 84.4
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.2e-36 156.8 138 57.2
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 5.2e-32 141.4 119 61.3
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 8.9e-32 140.6 89 74.2
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 2.0e-31 139.4 88 81.8
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.3e-30 136.7 193 46.6
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.7e-30 136.3 106 60.4
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 3.8e-30 135.2 89 69.7
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 4.9e-30 134.8 108 68.5
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.1e-29 133.7 70 91.4
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 4.2e-29 131.7 136 60.3
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.5e-28 128.6 107 67.3
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.7e-27 126.3 138 52.2
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 3.9e-27 125.2 86 69.8
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 8.7e-27 124.0 89 64.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.2e-23 113.6 89 58.4
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.7e-22 109.8 86 64.0
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.9e-22 108.2 74 71.6
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 3.2e-21 105.5 69 79.7
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.4e-16 90.1 65 67.7
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.3e-09 67.0 40 77.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.8e-09 65.9 37 83.8
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 4.5e-07 58.5 98 33.7
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.0e-06 57.4 97 35.1
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 1.7e-06 56.6 132 32.6
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 2.2e-06 56.2 98 33.7
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 2.2e-06 56.2 98 33.7
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 2.9e-06 55.8 137 29.9
Sed0011309 Sechium edule HOM05D002686 ORTHO05D003222 3.8e-06 55.5 131 29.8
MD15G1221300 Malus domestica HOM05D002686 ORTHO05D003222 8.4e-06 54.3 97 34.0
Zm00001eb373960 Zea mays HOM05D002686 ORTHO05D003222 8.4e-06 54.3 97 34.0


User provided reference genes

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