Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 0.0e+00 1661.7 840 100.0
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 0.0e+00 1564.7 842 94.4
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 0.0e+00 1550.0 840 92.3
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 0.0e+00 1531.9 840 91.2
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 0.0e+00 1531.2 840 91.4
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 0.0e+00 1527.3 840 91.4
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 0.0e+00 1520.0 840 90.6
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1516.1 840 89.8
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 0.0e+00 1515.7 840 89.8
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1514.6 840 89.6
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 0.0e+00 1514.6 840 89.6
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 0.0e+00 1514.2 840 89.8
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 0.0e+00 1514.2 840 90.0
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 0.0e+00 1512.7 840 89.5
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 0.0e+00 1511.9 841 89.8
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 0.0e+00 1507.7 840 89.4
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 0.0e+00 1507.7 841 90.0
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 0.0e+00 1505.0 840 90.0
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 0.0e+00 1503.8 842 89.1
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 0.0e+00 1503.4 840 90.0
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 0.0e+00 1497.3 840 89.0
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 0.0e+00 1495.7 842 89.7
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 0.0e+00 1494.6 841 88.2
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 0.0e+00 1493.4 845 88.4
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 0.0e+00 1493.0 842 88.4
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 0.0e+00 1488.8 840 89.4
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1486.5 825 89.6
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 0.0e+00 1484.2 842 88.1
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 0.0e+00 1482.6 845 88.0
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 0.0e+00 1482.2 842 88.4
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 0.0e+00 1481.5 851 87.5
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 0.0e+00 1480.7 1033 76.2
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 0.0e+00 1479.2 889 85.3
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 0.0e+00 1479.2 842 88.8
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 0.0e+00 1478.8 840 87.6
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1476.5 925 81.5
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 0.0e+00 1476.1 841 87.9
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 0.0e+00 1474.9 825 89.2
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 0.0e+00 1473.8 842 87.2
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 0.0e+00 1473.4 842 88.0
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 0.0e+00 1463.4 840 86.8
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 0.0e+00 1462.6 841 86.3
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 0.0e+00 1462.2 859 87.0
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 0.0e+00 1458.7 848 87.5
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 0.0e+00 1458.4 840 86.4
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 0.0e+00 1456.0 841 86.2
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 0.0e+00 1456.0 842 86.3
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 0.0e+00 1453.3 890 83.5
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 0.0e+00 1450.3 840 85.6
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 0.0e+00 1448.0 853 85.8
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 0.0e+00 1447.6 840 85.4
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 0.0e+00 1441.0 840 85.2
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 0.0e+00 1436.0 840 84.3
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 0.0e+00 1434.1 787 91.6
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 0.0e+00 1429.5 841 84.2
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 0.0e+00 1424.8 840 83.0
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 0.0e+00 1423.7 840 84.2
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 0.0e+00 1416.4 783 90.3
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 0.0e+00 1412.9 840 82.5
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 0.0e+00 1411.0 840 82.1
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 0.0e+00 1410.6 840 84.0
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 0.0e+00 1404.8 840 82.0
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 0.0e+00 1399.0 840 81.8
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 0.0e+00 1394.0 833 82.4
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 0.0e+00 1392.9 840 81.2
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 0.0e+00 1392.5 840 81.7
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 0.0e+00 1388.6 840 80.8
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 0.0e+00 1388.2 841 81.1
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1385.9 841 81.0
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 0.0e+00 1385.9 841 81.0
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 0.0e+00 1379.4 841 80.9
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 0.0e+00 1379.0 840 83.1
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 0.0e+00 1378.6 841 81.1
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 0.0e+00 1372.1 841 81.7
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 0.0e+00 1370.9 826 82.6
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1354.3 838 79.2
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 0.0e+00 1352.8 838 79.5
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 0.0e+00 1351.7 838 79.2
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 0.0e+00 1351.3 838 79.4
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 0.0e+00 1349.7 838 79.0
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 0.0e+00 1348.2 841 79.7
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 0.0e+00 1346.3 840 78.9
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 0.0e+00 1344.7 898 76.3
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 0.0e+00 1333.9 897 75.0
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 0.0e+00 1317.4 845 78.2
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 0.0e+00 1305.4 824 80.7
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 0.0e+00 1300.8 764 86.0
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 0.0e+00 1268.4 708 88.8
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 0.0e+00 1256.9 840 77.5
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 0.0e+00 1251.9 690 90.9
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 0.0e+00 1249.6 847 75.3
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 0.0e+00 1248.8 847 75.0
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 0.0e+00 1248.4 886 73.4
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 0.0e+00 1245.7 841 73.7
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 0.0e+00 1224.9 841 73.4
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 0.0e+00 1223.8 849 74.4
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 0.0e+00 1219.5 715 83.6
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 0.0e+00 1212.6 842 70.5
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 0.0e+00 1209.5 686 87.8
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 0.0e+00 1206.4 842 70.4
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 0.0e+00 1203.7 842 71.5
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 0.0e+00 1203.0 841 72.5
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 0.0e+00 1194.5 841 71.8
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 0.0e+00 1193.7 840 73.6
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 0.0e+00 1165.6 841 70.7
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 0.0e+00 1149.0 859 66.8
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 0.0e+00 1144.0 840 67.3
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 0.0e+00 1134.8 843 67.0
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 0.0e+00 1119.4 821 70.4
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 0.0e+00 1109.4 681 80.3
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 0.0e+00 1099.3 840 65.1
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 0.0e+00 1091.3 707 76.1
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 0.0e+00 1078.5 843 65.5
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 2.8e-309 1065.1 750 72.4
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 5.3e-308 1060.8 843 63.7
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 3.2e-289 998.4 1476 43.2
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 1.6e-288 996.1 688 71.7
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 8.3e-285 983.8 841 61.1
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 4.5e-275 951.4 847 56.6
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 3.7e-269 931.8 658 74.8
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 3.0e-258 895.6 848 53.5
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.1e-249 867.1 551 77.5
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 1.6e-235 820.1 872 51.8
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.2e-222 777.3 825 51.9
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 5.8e-206 721.8 626 66.0
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 3.9e-202 709.1 520 71.9
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 7.4e-201 704.9 506 73.3
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 4.8e-200 702.2 563 62.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 6.1e-179 632.1 382 83.5
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 3.8e-173 612.8 405 76.5
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 2.1e-171 607.1 454 67.6
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 2.8e-147 526.9 496 56.5
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 1.3e-144 518.1 373 67.6
Haze_02955 Corylus avellana HOM05D003429 ORTHO05D003873 1.0e-141 508.4 262 98.5
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 6.2e-139 499.2 517 55.7
Cre19.g751347 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 2.9e-136 490.3 505 48.5
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 1.4e-130 471.5 301 78.1
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 2.0e-129 467.6 323 74.0
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 5.1e-125 453.0 314 72.0
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.7e-104 384.8 288 67.7
Psat6g086600 Pisum sativum HOM05D003429 ORTHO05D003873 2.4e-103 380.9 261 74.7
Ca_28163_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.7e-94 350.9 223 75.8
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 2.1e-91 341.3 235 70.6
Oeu055890.1 Olea europaea HOM05D003429 ORTHO05D003873 1.3e-75 288.9 160 86.2
SHI11320 Sapria himalayana HOM05D003429 ORTHO05D003873 1.7e-75 288.5 192 76.6
Psat6g056200 Pisum sativum HOM05D003429 ORTHO05D003873 1.6e-70 271.9 189 73.5
Ca_14866_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.0e-68 265.0 180 73.3
CAN.G114.9 Capsicum annuum HOM05D003429 ORTHO05D003873 5.3e-66 256.9 280 52.5
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.6e-65 255.4 160 78.1
Glyma.10G105100 Glycine max HOM05D003429 ORTHO05D003873 1.0e-64 252.7 153 81.7
arahy.Tifrunner.gnm1.ann1.W9SEAP Arachis hypogaea HOM05D003429 ORTHO05D003873 8.0e-62 243.0 134 91.0
EL10Ac3g07336 Beta vulgaris HOM05D003429 ORTHO05D003873 1.8e-61 241.9 376 40.7
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 4.4e-60 237.3 179 65.4
Cpa.g.sc33.146 Carica papaya HOM05D003429 ORTHO05D003873 1.6e-57 228.8 133 87.2
GSVIVG01025857001 Vitis vinifera HOM05D003429 ORTHO05D003873 2.0e-57 228.4 133 85.0
vmacro07589 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 5.0e-56 223.8 144 77.1
Actinidia14027 Actinidia chinensis HOM05D003429 ORTHO05D003873 5.2e-53 213.8 159 66.7
Actinidia13983 Actinidia chinensis HOM05D003429 ORTHO05D003873 6.6e-40 170.2 138 60.9
VMungo0720G0230 Vigna mungo HOM05D003429 ORTHO05D003873 1.6e-38 165.6 163 54.6
Lsat_1_v5_gn_2_32281 Lactuca sativa HOM05D003429 ORTHO05D003873 3.6e-38 164.5 138 65.2
Rhsim09G0101900 Rhododendron simsii HOM05D003429 ORTHO05D003873 2.2e-35 155.2 210 45.7
SEGI_27821 Sequoiadendron giganteum HOM05D003429 ORTHO05D003873 6.4e-35 153.7 89 84.3
Haze_02953 Corylus avellana HOM05D003429 ORTHO05D003873 1.7e-32 145.6 83 89.2
FvH4_7g04520 Fragaria vesca HOM05D003429 ORTHO05D003873 3.0e-32 144.8 92 80.4
Nitab4.5_0000211g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.4e-29 136.0 79 87.3
Nitab4.5_0002094g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.4e-29 136.0 79 87.3
SEGI_15232 Sequoiadendron giganteum HOM05D003429 ORTHO05D003873 3.9e-24 117.9 76 68.4
QL04p023522 Quercus lobata HOM05D003429 ORTHO05D003873 5.0e-24 117.5 67 86.6
Cpa.g.sc33.147 Carica papaya HOM05D003429 ORTHO05D003873 3.6e-22 111.3 62 83.9
VMungo0720G3126 Vigna mungo HOM05D003429 ORTHO05D003873 1.1e-21 109.8 92 62.0
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.5e-20 103.6 100 60.0
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.5e-20 103.6 100 59.0
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.9e-19 101.7 106 57.5
Cre02.g141506 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 1.1e-18 99.8 123 43.9
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.0e-16 91.7 89 60.7
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 9.5e-15 86.7 93 54.8
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.4e-10 72.8 111 44.1
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.4e-10 72.8 111 44.1
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 7.1e-10 70.5 40 82.5
BcaC06g32584 Brassica carinata HOM05D003429 ORTHO05D003873 3.9e-08 64.7 38 73.7
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 2.5e-07 62.0 353 22.1
QL07p010213 Quercus lobata HOM05D002614 ORTHO05D000004 3.6e-06 58.2 37 64.9


User provided reference genes

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