Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1973.4 994 100.0
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1914.8 994 96.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1890.2 994 95.6
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 0.0e+00 1539.2 985 79.6
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 0.0e+00 1527.7 951 80.8
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 0.0e+00 1223.8 1000 63.8
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 0.0e+00 1221.5 982 64.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 0.0e+00 1221.1 987 63.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 0.0e+00 1214.1 993 62.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 0.0e+00 1201.0 992 63.2
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 0.0e+00 1187.9 998 61.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 0.0e+00 1161.0 977 60.2
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 0.0e+00 1155.2 967 61.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 0.0e+00 1154.0 989 60.2
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 0.0e+00 1150.2 994 59.9
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 0.0e+00 1142.1 969 60.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 0.0e+00 1140.9 977 59.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 0.0e+00 1082.4 974 59.1
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 0.0e+00 1079.7 944 60.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 2.0e-311 1072.4 967 58.7
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.3e-305 1053.1 1001 55.8
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 7.2e-296 1020.8 989 53.7
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 7.7e-282 974.2 991 52.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.3e-281 973.4 987 52.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.8e-278 963.0 989 51.8
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 2.3e-278 962.6 970 52.2
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.3e-276 956.8 1001 51.3
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 9.2e-275 950.7 978 52.4
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.2e-274 950.3 989 53.6
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.3e-273 946.8 994 50.4
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.5e-256 889.4 1079 46.9
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 7.3e-256 887.9 786 57.3
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.8e-254 883.2 985 48.4
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 4.4e-253 878.6 987 49.8
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.8e-253 878.2 1087 46.6
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.8e-244 849.0 1205 43.2
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 2.7e-210 736.5 518 71.8
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 5.7e-208 728.8 496 72.8
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.4e-205 719.5 608 60.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.0e-204 718.0 497 70.8
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.5e-200 703.4 775 51.1
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 4.3e-200 702.6 467 73.0
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.4e-198 697.6 548 65.5
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.5e-197 694.1 516 66.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.4e-193 681.0 449 72.6
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.0e-193 679.9 455 71.4
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.1e-193 679.1 471 69.0
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.8e-191 673.3 1294 35.4
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 6.3e-191 672.2 460 72.2
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 3.5e-189 666.4 473 69.3
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.2e-187 659.8 476 65.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 4.7e-186 656.0 496 65.7
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.9e-185 652.9 452 67.9
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.3e-183 647.9 455 64.8
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.1e-179 634.8 454 68.1
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.0e-177 628.2 468 65.6
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.2e-176 624.8 384 77.6
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.5e-176 624.4 468 65.6
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.5e-176 624.4 468 65.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-176 624.4 484 61.4
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.7e-175 619.8 470 63.2
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 3.1e-174 616.7 467 62.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.2e-173 614.8 485 63.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 5.9e-173 612.5 466 63.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.8e-169 600.9 454 63.7
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 5.2e-169 599.4 455 61.5
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 8.8e-169 598.6 455 61.1
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.5e-168 597.8 455 61.5
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.4e-166 591.3 455 62.2
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 5.5e-163 579.3 1107 35.2
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.0e-161 575.1 445 63.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 8.9e-161 572.0 455 62.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 2.0e-160 570.9 455 62.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 9.8e-160 568.5 454 61.9
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.1e-158 565.1 723 46.7
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.8e-158 564.3 455 61.5
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.4e-158 563.9 471 59.0
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.2e-157 561.6 453 60.9
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.6e-157 561.2 1100 34.6
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.0e-157 560.8 456 62.5
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.3e-156 557.4 455 61.1
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.3e-156 557.4 455 58.2
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.9e-156 557.0 445 61.6
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.9e-156 556.6 445 62.7
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 6.6e-156 555.8 445 61.3
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 9.5e-155 552.0 445 62.0
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.6e-154 551.2 455 60.7
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 8.0e-154 548.9 455 60.4
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.3e-151 541.6 514 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.4e-150 538.1 1031 35.0
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 7.0e-150 535.8 477 57.9
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 9.2e-150 535.4 1084 33.8
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 5.0e-148 529.6 352 72.2
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.1e-145 521.9 336 74.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.1e-141 507.7 642 47.2
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.9e-139 501.1 364 67.6
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.4e-137 495.0 458 52.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 8.9e-137 492.3 458 56.8
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 8.9e-137 492.3 458 56.8
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.2e-135 487.6 713 41.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 3.5e-133 480.3 364 63.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.8e-133 479.2 471 52.9
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 4.0e-129 466.8 350 66.0
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.3e-127 461.8 976 33.5
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 2.7e-117 427.6 373 58.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.7e-116 424.9 467 45.4
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 5.1e-116 423.3 550 43.5
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 9.9e-112 409.1 363 58.4
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.1e-102 379.0 467 44.3
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.2e-96 359.0 416 43.5
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 7.6e-96 356.3 367 52.0
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.5e-91 342.0 257 65.4
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 3.9e-76 290.8 316 48.1
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.4e-73 282.3 196 74.0
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 7.7e-72 276.6 458 39.7
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.1e-69 266.9 256 52.0
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-68 265.8 206 63.1
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.1e-67 262.7 179 72.1
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-62 245.7 168 66.7
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.5e-59 235.7 189 63.5
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 9.8e-43 179.9 124 66.9
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 6.2e-37 160.6 235 40.9
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 2.2e-34 152.1 313 35.1
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 6.4e-26 124.0 146 47.3
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 6.8e-20 104.0 164 42.1
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.6e-19 100.5 62 69.4
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.4e-12 79.7 79 54.4
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 9.3e-09 67.0 123 37.4
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 6.6e-07 60.8 42 57.1


User provided reference genes

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