Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.0e-60 234.6 118 100.0
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.4e-26 120.6 125 60.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 6.6e-23 110.9 118 57.6
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 6.6e-23 110.9 118 57.6
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.3e-22 108.6 121 55.4
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 4.6e-16 88.2 106 52.8
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.8e-15 86.3 117 50.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.9e-15 85.1 116 46.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-14 83.6 114 50.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.9e-14 82.8 112 46.4
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 4.3e-14 81.6 112 46.4
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 7.4e-14 80.9 75 58.7
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.4e-14 80.9 75 58.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-13 79.7 123 42.3
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.6e-13 79.7 133 41.4
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 8.1e-13 77.4 65 67.7
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.8e-12 76.3 124 42.7
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-12 74.7 65 66.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-12 74.7 95 49.5
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-12 74.7 65 66.2
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 4.5e-11 71.6 63 58.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.8e-11 71.2 110 45.5
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 5.8e-11 71.2 78 53.8
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.6e-11 70.9 110 44.5
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 9.9e-11 70.5 100 46.0
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.3e-10 70.1 70 54.3
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.7e-10 69.7 104 41.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 2.2e-10 69.3 86 47.7
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.2e-10 69.3 82 51.2
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-10 69.3 110 43.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-10 69.3 100 46.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 3.8e-10 68.6 66 59.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.9e-10 68.2 111 43.2
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 4.9e-10 68.2 104 40.4
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 6.4e-10 67.8 44 77.3
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 8.4e-10 67.4 63 58.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.4e-10 67.4 99 47.5
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.1e-09 67.0 108 45.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.4e-09 66.6 93 48.4
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-09 66.6 84 47.6
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.9e-09 66.2 74 51.4
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.9e-09 66.2 113 41.6
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.9e-09 66.2 70 55.7
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.9e-09 66.2 56 60.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.4e-09 65.9 105 40.0
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.2e-09 65.5 115 40.0
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 4.2e-09 65.1 59 61.0
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 4.2e-09 65.1 57 66.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 4.2e-09 65.1 64 60.9
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 5.5e-09 64.7 118 40.7
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.1e-09 64.3 78 55.1
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 9.3e-09 63.9 130 38.5
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 9.3e-09 63.9 65 58.5
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.2e-08 63.5 53 64.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.2e-08 63.5 73 53.4
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.2e-08 63.5 77 50.6
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.2e-08 63.5 109 36.7
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-08 63.5 56 67.9
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.2e-08 63.5 56 67.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.2e-08 63.5 56 60.7
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.6e-08 63.2 58 60.3
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.6e-08 63.2 58 65.5
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 1.6e-08 63.2 111 40.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 2.1e-08 62.8 52 67.3
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.1e-08 62.8 66 56.1
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.1e-08 62.8 57 56.1
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 2.7e-08 62.4 41 78.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.7e-08 62.4 51 64.7
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 2.7e-08 62.4 51 62.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.7e-08 62.4 92 44.6
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.7e-08 62.4 49 63.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 4.6e-08 61.6 58 60.3
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 6.0e-08 61.2 122 34.4
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 6.0e-08 61.2 57 57.9
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.0e-08 61.2 103 45.6
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 6.0e-08 61.2 59 61.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.9e-08 60.8 60 58.3
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.0e-07 60.5 108 37.0
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.0e-07 60.5 66 54.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.3e-07 60.1 64 53.1
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.3e-07 60.1 46 60.9
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.3e-07 60.1 64 48.4
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 2.3e-07 59.3 55 60.0
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-07 59.3 51 58.8
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 2.3e-07 59.3 40 77.5
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 2.3e-07 59.3 56 55.4
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 3.0e-07 58.9 33 90.9
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.0e-07 58.9 35 82.9
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 3.0e-07 58.9 69 53.6
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.0e-07 58.9 53 56.6
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 3.0e-07 58.9 43 67.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 3.0e-07 58.9 59 62.7
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.0e-07 58.9 51 56.9
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 3.9e-07 58.5 72 44.4
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.9e-07 58.5 52 61.5
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 3.9e-07 58.5 52 61.5
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 3.9e-07 58.5 52 61.5
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.9e-07 58.5 43 69.8
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 5.1e-07 58.2 70 52.9
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.1e-07 58.2 50 64.0
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.1e-07 58.2 72 50.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.7e-07 57.8 61 52.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.7e-07 57.8 61 52.5
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.7e-07 57.8 73 49.3
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 6.7e-07 57.8 59 57.6
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 6.7e-07 57.8 57 56.1
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 6.7e-07 57.8 52 57.7
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 8.7e-07 57.4 106 35.8
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 8.7e-07 57.4 51 62.7
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.7e-07 57.4 51 62.7
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 8.7e-07 57.4 65 55.4
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 8.7e-07 57.4 52 53.8
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 8.7e-07 57.4 48 60.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.1e-06 57.0 116 37.9
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.5e-06 56.6 56 55.4
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.5e-06 56.6 43 65.1
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.5e-06 56.6 40 77.5
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-06 56.2 64 54.7
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-06 56.2 51 56.9
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 1.9e-06 56.2 114 37.7
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 1.9e-06 56.2 110 39.1
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.9e-06 56.2 74 47.3
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.9e-06 56.2 47 63.8
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.5e-06 55.8 57 56.1
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 2.5e-06 55.8 46 60.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.5e-06 55.8 60 53.3
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-06 55.8 60 51.7
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.5e-06 55.8 71 53.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.5e-06 55.8 43 65.1
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.3e-06 55.5 35 77.1
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 3.3e-06 55.5 57 54.4
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.3e-06 55.5 41 65.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 3.3e-06 55.5 48 58.3
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.3e-06 55.5 48 64.6
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 3.3e-06 55.5 42 71.4
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 3.3e-06 55.5 51 56.9
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 3.3e-06 55.5 62 51.6
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 4.3e-06 55.1 71 46.5
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 4.3e-06 55.1 52 61.5
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 4.3e-06 55.1 70 48.6
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 4.3e-06 55.1 70 48.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 4.3e-06 55.1 70 48.6
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.3e-06 55.1 42 71.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 4.3e-06 55.1 43 62.8
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.3e-06 55.1 53 58.5
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 4.3e-06 55.1 55 58.2
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 5.6e-06 54.7 58 55.2
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 5.6e-06 54.7 58 55.2
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 5.6e-06 54.7 77 45.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.6e-06 54.7 51 60.8
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 5.6e-06 54.7 86 39.5
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 5.6e-06 54.7 35 77.1
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 5.6e-06 54.7 109 39.4
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.6e-06 54.7 53 58.5
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 7.4e-06 54.3 48 62.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 7.4e-06 54.3 48 62.5
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 7.4e-06 54.3 38 71.1
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 7.4e-06 54.3 35 77.1
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.4e-06 54.3 35 77.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 7.4e-06 54.3 65 50.8
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 7.4e-06 54.3 62 51.6
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 7.4e-06 54.3 67 50.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.4e-06 54.3 49 57.1
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 9.6e-06 53.9 44 65.9
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 9.6e-06 53.9 64 53.1
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 9.6e-06 53.9 35 74.3
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 9.6e-06 53.9 35 74.3
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 9.6e-06 53.9 58 51.7


User provided reference genes

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