Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010900 Carpinus fangiana HOM05D002966 ORTHO05D003274 3.4e-77 291.6 147 100.0
Cfa020466 Carpinus fangiana HOM05D002966 ORTHO05D003274 5.3e-38 161.4 147 63.9
Haze_20100 Corylus avellana HOM05D002966 ORTHO05D003274 7.2e-35 151.0 196 50.5
Haze_20101 Corylus avellana HOM05D002966 ORTHO05D003274 2.7e-34 149.1 196 50.0
Cfa018546 Carpinus fangiana HOM05D002966 ORTHO05D003274 1.1e-30 137.1 72 94.4
QL04p077258 Quercus lobata HOM05D002966 ORTHO05D003274 1.4e-30 136.7 198 46.5
Gohir.A01G096300 Gossypium hirsutum HOM05D002966 ORTHO05D003274 4.1e-30 135.2 194 46.4
Gohir.D01G080600 Gossypium hirsutum HOM05D002966 ORTHO05D003274 5.3e-30 134.8 194 46.4
Gorai.002G105300 Gossypium raimondii HOM05D002966 ORTHO05D003274 5.3e-30 134.8 194 46.4
CSS0037695 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 1.2e-29 133.7 193 45.6
Ciclev10005912m.g Citrus clementina HOM05D002966 ORTHO05D003274 1.2e-29 133.7 194 44.8
CiPaw.11G063400 Carya illinoinensis HOM05D002966 ORTHO05D003274 2.0e-29 132.9 196 45.9
Lj1P909T68 Lonicera japonica HOM05D002966 ORTHO05D003274 2.0e-29 132.9 191 45.5
Dinv19602 Davidia involucrata HOM05D002966 ORTHO05D003274 3.5e-29 132.1 189 45.5
Manes.15G015100 Manihot esculenta HOM05D002966 ORTHO05D003274 3.5e-29 132.1 196 44.9
MELO3C012619.2 Cucumis melo HOM05D002966 ORTHO05D003274 7.7e-29 131.0 193 44.6
ClCG09G022620 Citrullus lanatus HOM05D002966 ORTHO05D003274 1.0e-28 130.6 193 44.6
CsaV3_7G022780 Cucumis sativus L. HOM05D002966 ORTHO05D003274 1.0e-28 130.6 193 44.6
Actinidia07368 Actinidia chinensis HOM05D002966 ORTHO05D003274 1.7e-28 129.8 191 45.5
Thecc.07G160900 Theobroma cacao HOM05D002966 ORTHO05D003274 1.7e-28 129.8 194 44.8
TWI39G0520 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 2.9e-28 129.0 192 43.8
CSS0042932 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 3.8e-28 128.6 191 45.0
Rhsim06G0240500 Rhododendron simsii HOM05D002966 ORTHO05D003274 3.8e-28 128.6 193 45.1
vmacro11714 Vaccinium macrocarpon HOM05D002966 ORTHO05D003274 3.8e-28 128.6 192 45.8
Duzib213G0090 Durio zibethinus HOM05D002966 ORTHO05D003274 6.5e-28 127.9 194 45.4
Nn7g37912 Nelumbo nucifera HOM05D002966 ORTHO05D003274 6.5e-28 127.9 193 43.5
Cpa.g.c29671.3 Carica papaya HOM05D002966 ORTHO05D003274 8.5e-28 127.5 194 44.8
CANSAT80G1447 Cannabis sativa HOM05D002966 ORTHO05D003274 1.1e-27 127.1 197 42.6
TWI38G0569 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 1.1e-27 127.1 191 44.0
Potri.005G096100 Populus trichocarpa HOM05D002966 ORTHO05D003274 1.5e-27 126.7 197 42.6
BcaB06g25505 Brassica carinata HOM05D002966 ORTHO05D003274 2.5e-27 125.9 194 41.8
BraA05t22467Z Brassica rapa HOM05D002966 ORTHO05D003274 3.2e-27 125.6 194 41.8
BcaC05g29231 Brassica carinata HOM05D002966 ORTHO05D003274 4.2e-27 125.2 194 41.8
C05p55060 Brassica napus HOM05D002966 ORTHO05D003274 4.2e-27 125.2 194 41.8
BolC1t05175H Brassica oleracea HOM05D002966 ORTHO05D003274 4.2e-27 125.2 193 42.5
BolC5t34174H Brassica oleracea HOM05D002966 ORTHO05D003274 4.2e-27 125.2 194 41.8
MSTRG.14551 Avicennia marina HOM05D002966 ORTHO05D003274 5.5e-27 124.8 196 43.9
A05p36630 Brassica napus HOM05D002966 ORTHO05D003274 5.5e-27 124.8 195 41.5
Sabra05G0079100 Salix brachista HOM05D002966 ORTHO05D003274 5.5e-27 124.8 198 41.4
Solyc07g066540.1 Solanum lycopersicum HOM05D002966 ORTHO05D003274 5.5e-27 124.8 194 44.3
Sp3g11010 Schrenkiella parvula HOM05D002966 ORTHO05D003274 7.2e-27 124.4 193 41.5
Manes.17G045900 Manihot esculenta HOM05D002966 ORTHO05D003274 9.4e-27 124.0 196 42.9
Nitab4.5_0002321g0020 Nicotiana tabacum HOM05D002966 ORTHO05D003274 1.2e-26 123.6 194 43.3
Sed0021245 Sechium edule HOM05D002966 ORTHO05D003274 1.2e-26 123.6 189 42.9
A01p40690 Brassica napus HOM05D002966 ORTHO05D003274 1.6e-26 123.2 193 40.9
BraA01t04103Z Brassica rapa HOM05D002966 ORTHO05D003274 1.6e-26 123.2 193 40.9
Oeu002798.1 Olea europaea HOM05D002966 ORTHO05D003274 2.7e-26 122.5 194 43.3
Hma1.2p1_0151F.1_g067530 Hydrangea macrophylla HOM05D002966 ORTHO05D003274 3.6e-26 122.1 191 42.4
PGSC0003DMG400022234 Solanum tuberosum HOM05D002966 ORTHO05D003274 3.6e-26 122.1 195 43.6
Medtr8g445730 Medicago truncatula HOM05D002966 ORTHO05D003274 8.0e-26 120.9 192 42.7
Psat4g176920 Pisum sativum HOM05D002966 ORTHO05D003274 8.0e-26 120.9 196 42.9
Prupe.4G137100 Prunus persica HOM05D002966 ORTHO05D003274 8.0e-26 120.9 193 43.0
CARHR087390 Cardamine hirsuta HOM05D002966 ORTHO05D003274 1.0e-25 120.6 197 40.1
Sopen07g034700 Solanum pennellii HOM05D002966 ORTHO05D003274 1.0e-25 120.6 192 43.2
THA.LOC104810266 Tarenaya hassleriana HOM05D002966 ORTHO05D003274 1.0e-25 120.6 192 41.7
C01p52320 Brassica napus HOM05D002966 ORTHO05D003274 1.4e-25 120.2 194 41.2
DCAR_019925 Daucus carota HOM05D002966 ORTHO05D003274 1.8e-25 119.8 194 41.2
MD10G1204600 Malus domestica HOM05D002966 ORTHO05D003274 2.3e-25 119.4 193 41.5
AL3G24540 Arabidopsis lyrata HOM05D002966 ORTHO05D003274 3.0e-25 119.0 199 39.7
Cc00_g21090 Coffea canephora HOM05D002966 ORTHO05D003274 4.0e-25 118.6 193 42.5
AT3G12870 Arabidopsis thaliana HOM05D002966 ORTHO05D003274 5.2e-25 118.2 197 39.6
BcaB04g21042 Brassica carinata HOM05D002966 ORTHO05D003274 5.2e-25 118.2 197 41.1
Carub.0003s1223 Capsella rubella HOM05D002966 ORTHO05D003274 5.2e-25 118.2 196 39.8
TPR.G28745 Trifolium pratense HOM05D002966 ORTHO05D003274 5.2e-25 118.2 197 41.6
Thhalv10021525m.g Eutrema salsugineum HOM05D002966 ORTHO05D003274 6.8e-25 117.9 199 40.7
MD05G1223200 Malus domestica HOM05D002966 ORTHO05D003274 6.8e-25 117.9 194 41.2
RcHm_v2.0_Chr5g0025961 Rosa chinensis HOM05D002966 ORTHO05D003274 6.8e-25 117.9 193 41.5
HanXRQChr11g0335081 Helianthus annuus HOM05D002966 ORTHO05D003274 1.2e-24 117.1 190 42.1
Lj3g0018587 Lotus japonicus HOM05D002966 ORTHO05D003274 1.2e-24 117.1 194 42.3
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 1.5e-24 116.7 188 41.0
BcaC09g48267 Brassica carinata HOM05D002966 ORTHO05D003274 1.5e-24 116.7 191 40.8
FAN16G2402 Fragaria x ananassa HOM05D002966 ORTHO05D003274 1.5e-24 116.7 193 40.9
Migut.H01679 Erythranthe guttata HOM05D002966 ORTHO05D003274 2.6e-24 115.9 191 42.4
PGR031G3508 Punica granatum HOM05D002966 ORTHO05D003274 2.6e-24 115.9 184 41.8
Ah.16g106440 Amaranthus hybridus HOM05D002966 ORTHO05D003274 3.4e-24 115.5 190 38.9
Eucgr.F04429 Eucalyptus grandis HOM05D002966 ORTHO05D003274 3.4e-24 115.5 192 42.2
FvH4_3g15460 Fragaria vesca HOM05D002966 ORTHO05D003274 3.4e-24 115.5 193 40.4
FAN21G2350 Fragaria x ananassa HOM05D002966 ORTHO05D003274 3.4e-24 115.5 193 40.4
Glyma.04G098800 Glycine max HOM05D002966 ORTHO05D003274 3.4e-24 115.5 189 42.3
Ca_00875_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 5.7e-24 114.8 191 41.4
Ca_29620_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 5.7e-24 114.8 191 41.4
Glyma.06G100500 Glycine max HOM05D002966 ORTHO05D003274 7.5e-24 114.4 189 42.3
PSO170G3509 Papaver somniferum HOM05D002966 ORTHO05D003274 7.5e-24 114.4 190 42.1
Sed0002257 Sechium edule HOM05D002966 ORTHO05D003274 7.5e-24 114.4 194 39.2
Atru.BG.175.p Acer truncatum HOM05D002966 ORTHO05D003274 1.3e-23 113.6 178 42.7
PSO528G0254 Papaver somniferum HOM05D002966 ORTHO05D003274 1.7e-23 113.2 190 41.6
Eucgr.F04302 Eucalyptus grandis HOM05D002966 ORTHO05D003274 2.8e-23 112.5 190 41.6
AUR62026777 Chenopodium quinoa HOM05D002966 ORTHO05D003274 6.3e-23 111.3 189 38.6
FAN11G0046 Fragaria x ananassa HOM05D002966 ORTHO05D003274 6.3e-23 111.3 193 39.9
VMungo1309G0555 Vigna mungo HOM05D002966 ORTHO05D003274 1.8e-22 109.8 190 41.6
Phvul.009G033300 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 2.4e-22 109.4 195 41.0
FAN25G2501 Fragaria x ananassa HOM05D002966 ORTHO05D003274 4.1e-22 108.6 191 38.7
Cfa010899 Carpinus fangiana HOM05D002966 ORTHO05D003274 1.2e-21 107.1 69 79.7
Lalb_Chr19g0133331 Lupinus albus HOM05D002966 ORTHO05D003274 1.2e-21 107.1 191 39.3
SalBow8G2246 Salvia bowleyana HOM05D002966 ORTHO05D003274 1.6e-21 106.7 192 39.1
Aqoxy6G02814 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 5.9e-21 104.8 185 38.9
MBI02_g00520_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 2.9e-20 102.4 182 39.0
SGA_v2.0_scaffold7G03599 Striga asiatica HOM05D002966 ORTHO05D003274 3.8e-20 102.1 190 36.3
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 1.1e-19 100.5 190 35.8
Cfa019003 Carpinus fangiana HOM05D002966 ORTHO05D003274 1.5e-19 100.1 69 76.8
Peaxi162Scf00452g00614 Petunia axillaris HOM05D002966 ORTHO05D003274 1.2e-18 97.1 56 83.9
Lalb_Chr03g0031721 Lupinus albus HOM05D002966 ORTHO05D003274 1.6e-18 96.7 199 37.7
Nitab4.5_0002633g0040 Nicotiana tabacum HOM05D002966 ORTHO05D003274 2.1e-18 96.3 54 85.2
Aa31LG8G110 Aethionema arabicum HOM05D002966 ORTHO05D003274 8.0e-18 94.4 202 35.1
ATR0763G105 Amborella trichopoda HOM05D002966 ORTHO05D003274 1.0e-17 94.0 189 36.0
Oeu034059.1 Olea europaea HOM05D002966 ORTHO05D003274 4.0e-17 92.0 55 80.0
SGA_v2.0_scaffold239G44041 Striga asiatica HOM05D002966 ORTHO05D003274 1.1e-14 84.0 189 34.4
HPP92_000947 Vanilla planifolia HOM05D002966 ORTHO05D003274 1.3e-12 77.0 191 31.9
COL.COLO4_38362 Corchorus olitorius HOM05D002966 ORTHO05D003274 1.1e-11 73.9 41 85.4
Lsat_1_v5_gn_2_120921 Lactuca sativa HOM05D002966 ORTHO05D003274 1.1e-11 73.9 229 29.3
Actinidia14217 Actinidia chinensis HOM05D002966 ORTHO05D003274 3.3e-11 72.4 41 82.9
Cfa015983 Carpinus fangiana HOM05D000018 ORTHO05D001920 1.6e-10 70.1 37 83.8
Os03g0778400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 4.7e-10 68.6 53 58.5
EL10Ac2g03280 Beta vulgaris HOM05D002966 ORTHO05D003274 1.4e-09 67.0 41 68.3
Zm00001eb057330 Zea mays HOM05D002966 ORTHO05D003274 2.3e-09 66.2 55 52.7
Zm00001eb213650 Zea mays HOM05D002966 ORTHO05D003274 2.3e-09 66.2 55 52.7
Zm00001eb059720 Zea mays HOM05D002966 ORTHO05D003274 2.6e-08 62.8 55 50.9
ATR0053G034 Amborella trichopoda HOM05D002966 ORTHO05D003274 4.4e-08 62.0 59 49.2
Zm00001eb059740 Zea mays HOM05D002966 ORTHO05D003274 9.8e-08 60.8 55 50.9
BcaC04g20140 Brassica carinata HOM05D002966 ORTHO05D003274 3.2e-06 55.8 60 41.7
C09p47270 Brassica napus HOM05D002966 ORTHO05D003274 3.2e-06 55.8 60 41.7
BolC9t57584H Brassica oleracea HOM05D002966 ORTHO05D003274 3.2e-06 55.8 60 41.7
BcaB08g35977 Brassica carinata HOM05D002966 ORTHO05D003274 4.1e-06 55.5 60 41.7
A10p13340 Brassica napus HOM05D002966 ORTHO05D003274 4.1e-06 55.5 59 42.4
BraA10t43435Z Brassica rapa HOM05D002966 ORTHO05D003274 4.1e-06 55.5 59 42.4
Phvul.006G061800 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 4.1e-06 55.5 59 47.5
Prupe.6G033100 Prunus persica HOM05D002966 ORTHO05D003274 7.0e-06 54.7 59 47.5
Glyma.18G071400 Glycine max HOM05D002966 ORTHO05D003274 9.2e-06 54.3 59 45.8
VMungo0540G2097 Vigna mungo HOM05D002966 ORTHO05D003274 9.2e-06 54.3 59 45.8


User provided reference genes

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