Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010899 Carpinus fangiana HOM05D002966 ORTHO05D003274 2.1e-65 252.3 136 100.0
Cfa019003 Carpinus fangiana HOM05D002966 ORTHO05D003274 8.4e-62 240.4 136 96.3
Cfa020466 Carpinus fangiana HOM05D002966 ORTHO05D003274 3.7e-41 171.8 105 84.8
Haze_20101 Corylus avellana HOM05D002966 ORTHO05D003274 7.6e-31 137.5 77 90.9
Haze_20100 Corylus avellana HOM05D002966 ORTHO05D003274 2.2e-30 136.0 77 89.6
Duzib213G0090 Durio zibethinus HOM05D002966 ORTHO05D003274 1.4e-29 133.3 77 85.7
CiPaw.11G063400 Carya illinoinensis HOM05D002966 ORTHO05D003274 2.5e-29 132.5 77 85.7
Thecc.07G160900 Theobroma cacao HOM05D002966 ORTHO05D003274 2.5e-29 132.5 77 83.1
Actinidia14217 Actinidia chinensis HOM05D002966 ORTHO05D003274 3.2e-29 132.1 77 84.4
Gohir.A01G096300 Gossypium hirsutum HOM05D002966 ORTHO05D003274 4.2e-29 131.7 77 84.4
Gohir.D01G080600 Gossypium hirsutum HOM05D002966 ORTHO05D003274 4.2e-29 131.7 77 84.4
Gorai.002G105300 Gossypium raimondii HOM05D002966 ORTHO05D003274 4.2e-29 131.7 77 84.4
CSS0037695 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 5.5e-29 131.3 77 84.4
CSS0042932 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 5.5e-29 131.3 77 84.4
vmacro11714 Vaccinium macrocarpon HOM05D002966 ORTHO05D003274 1.2e-28 130.2 77 83.1
Ciclev10005912m.g Citrus clementina HOM05D002966 ORTHO05D003274 1.6e-28 129.8 77 81.8
Lj1P909T68 Lonicera japonica HOM05D002966 ORTHO05D003274 1.6e-28 129.8 77 83.1
Rhsim06G0240500 Rhododendron simsii HOM05D002966 ORTHO05D003274 2.1e-28 129.4 77 81.8
COL.COLO4_38362 Corchorus olitorius HOM05D002966 ORTHO05D003274 2.7e-28 129.0 77 81.8
Manes.15G015100 Manihot esculenta HOM05D002966 ORTHO05D003274 3.5e-28 128.6 77 80.5
Hma1.2p1_0151F.1_g067530 Hydrangea macrophylla HOM05D002966 ORTHO05D003274 7.9e-28 127.5 77 80.5
EL10Ac2g03280 Beta vulgaris HOM05D002966 ORTHO05D003274 1.0e-27 127.1 77 79.2
Dinv19602 Davidia involucrata HOM05D002966 ORTHO05D003274 1.0e-27 127.1 73 84.9
PGR031G3508 Punica granatum HOM05D002966 ORTHO05D003274 1.0e-27 127.1 77 79.2
QL04p077258 Quercus lobata HOM05D002966 ORTHO05D003274 1.3e-27 126.7 77 81.8
Migut.H01679 Erythranthe guttata HOM05D002966 ORTHO05D003274 1.8e-27 126.3 77 79.2
HanXRQChr11g0335081 Helianthus annuus HOM05D002966 ORTHO05D003274 1.8e-27 126.3 77 79.2
Sabra05G0079100 Salix brachista HOM05D002966 ORTHO05D003274 1.8e-27 126.3 77 80.5
Potri.005G096100 Populus trichocarpa HOM05D002966 ORTHO05D003274 2.3e-27 125.9 77 80.5
Oeu002798.1 Olea europaea HOM05D002966 ORTHO05D003274 3.0e-27 125.6 77 79.2
Atru.BG.175.p Acer truncatum HOM05D002966 ORTHO05D003274 3.9e-27 125.2 73 83.6
Nn7g37912 Nelumbo nucifera HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 80.5
Actinidia07368 Actinidia chinensis HOM05D002966 ORTHO05D003274 5.1e-27 124.8 75 80.0
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 6.7e-27 124.4 75 80.0
Solyc07g066540.1 Solanum lycopersicum HOM05D002966 ORTHO05D003274 6.7e-27 124.4 77 77.9
Eucgr.F04302 Eucalyptus grandis HOM05D002966 ORTHO05D003274 8.7e-27 124.0 77 79.2
Eucgr.F04429 Eucalyptus grandis HOM05D002966 ORTHO05D003274 8.7e-27 124.0 77 79.2
CANSAT80G1447 Cannabis sativa HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 80.5
Sopen07g034700 Solanum pennellii HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 77.9
PGSC0003DMG400022234 Solanum tuberosum HOM05D002966 ORTHO05D003274 1.1e-26 123.6 80 77.5
TWI38G0569 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 1.5e-26 123.2 77 77.9
Manes.17G045900 Manihot esculenta HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 76.6
Sp3g11010 Schrenkiella parvula HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 79.2
MSTRG.14551 Avicennia marina HOM05D002966 ORTHO05D003274 3.3e-26 122.1 80 76.2
BcaC05g29231 Brassica carinata HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 77.9
C05p55060 Brassica napus HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 77.9
BolC5t34174H Brassica oleracea HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 77.9
FAN16G2402 Fragaria x ananassa HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 76.6
Nitab4.5_0002321g0020 Nicotiana tabacum HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 75.3
RcHm_v2.0_Chr5g0025961 Rosa chinensis HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 76.6
TWI39G0520 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 76.6
Ah.16g106440 Amaranthus hybridus HOM05D002966 ORTHO05D003274 4.3e-26 121.7 77 74.0
CsaV3_7G022780 Cucumis sativus L. HOM05D002966 ORTHO05D003274 4.3e-26 121.7 77 76.6
THA.LOC104810266 Tarenaya hassleriana HOM05D002966 ORTHO05D003274 4.3e-26 121.7 77 76.6
MELO3C012619.2 Cucumis melo HOM05D002966 ORTHO05D003274 5.7e-26 121.3 77 75.3
MD05G1223200 Malus domestica HOM05D002966 ORTHO05D003274 5.7e-26 121.3 77 76.6
MD10G1204600 Malus domestica HOM05D002966 ORTHO05D003274 5.7e-26 121.3 77 76.6
FvH4_3g15460 Fragaria vesca HOM05D002966 ORTHO05D003274 7.4e-26 120.9 77 75.3
FAN21G2350 Fragaria x ananassa HOM05D002966 ORTHO05D003274 7.4e-26 120.9 77 75.3
AL3G24540 Arabidopsis lyrata HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 77.9
A05p36630 Brassica napus HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 76.6
BraA05t22467Z Brassica rapa HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 76.6
Carub.0003s1223 Capsella rubella HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 77.9
AUR62026777 Chenopodium quinoa HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 75.3
Prupe.4G137100 Prunus persica HOM05D002966 ORTHO05D003274 9.7e-26 120.6 77 77.9
BcaB06g25505 Brassica carinata HOM05D002966 ORTHO05D003274 1.3e-25 120.2 77 76.6
ClCG09G022620 Citrullus lanatus HOM05D002966 ORTHO05D003274 1.3e-25 120.2 77 75.3
AT3G12870 Arabidopsis thaliana HOM05D002966 ORTHO05D003274 2.2e-25 119.4 77 76.6
CARHR087390 Cardamine hirsuta HOM05D002966 ORTHO05D003274 2.2e-25 119.4 77 76.6
Cpa.g.c29671.3 Carica papaya HOM05D002966 ORTHO05D003274 2.2e-25 119.4 77 74.0
MBI02_g00520_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 2.2e-25 119.4 75 77.3
A01p40690 Brassica napus HOM05D002966 ORTHO05D003274 2.8e-25 119.0 77 75.3
BolC1t05175H Brassica oleracea HOM05D002966 ORTHO05D003274 2.8e-25 119.0 77 76.6
BraA01t04103Z Brassica rapa HOM05D002966 ORTHO05D003274 2.8e-25 119.0 77 75.3
ATR0763G105 Amborella trichopoda HOM05D002966 ORTHO05D003274 4.8e-25 118.2 77 74.0
Sed0021245 Sechium edule HOM05D002966 ORTHO05D003274 4.8e-25 118.2 77 71.4
Cc00_g21090 Coffea canephora HOM05D002966 ORTHO05D003274 6.3e-25 117.9 78 74.4
BcaC09g48267 Brassica carinata HOM05D002966 ORTHO05D003274 8.2e-25 117.5 78 76.9
C01p52320 Brassica napus HOM05D002966 ORTHO05D003274 8.2e-25 117.5 78 76.9
Thhalv10021525m.g Eutrema salsugineum HOM05D002966 ORTHO05D003274 8.2e-25 117.5 78 76.9
Aqoxy6G02814 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 1.1e-24 117.1 77 72.7
DCAR_019925 Daucus carota HOM05D002966 ORTHO05D003274 1.4e-24 116.7 77 71.4
FAN11G0046 Fragaria x ananassa HOM05D002966 ORTHO05D003274 1.4e-24 116.7 77 74.0
PSO170G3509 Papaver somniferum HOM05D002966 ORTHO05D003274 1.4e-24 116.7 77 74.0
BcaB04g21042 Brassica carinata HOM05D002966 ORTHO05D003274 1.8e-24 116.3 78 75.6
FAN25G2501 Fragaria x ananassa HOM05D002966 ORTHO05D003274 3.1e-24 115.5 75 73.3
Lsat_1_v5_gn_2_120921 Lactuca sativa HOM05D002966 ORTHO05D003274 4.1e-24 115.2 77 74.0
PSO528G0254 Papaver somniferum HOM05D002966 ORTHO05D003274 4.1e-24 115.2 77 72.7
Ca_00875_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 9.0e-24 114.0 77 72.7
Ca_29620_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 9.0e-24 114.0 77 72.7
Medtr8g445730 Medicago truncatula HOM05D002966 ORTHO05D003274 1.5e-23 113.2 77 71.4
Sed0002257 Sechium edule HOM05D002966 ORTHO05D003274 1.5e-23 113.2 77 67.5
Aa31LG8G110 Aethionema arabicum HOM05D002966 ORTHO05D003274 2.0e-23 112.8 77 74.0
TPR.G28745 Trifolium pratense HOM05D002966 ORTHO05D003274 2.0e-23 112.8 77 71.4
Cfa010900 Carpinus fangiana HOM05D002966 ORTHO05D003274 5.9e-23 111.3 69 79.7
Glyma.04G098800 Glycine max HOM05D002966 ORTHO05D003274 5.9e-23 111.3 77 70.1
Glyma.06G100500 Glycine max HOM05D002966 ORTHO05D003274 1.3e-22 110.2 77 68.8
SalBow8G2246 Salvia bowleyana HOM05D002966 ORTHO05D003274 1.3e-22 110.2 77 68.8
Psat4g176920 Pisum sativum HOM05D002966 ORTHO05D003274 1.7e-22 109.8 77 70.1
Lj3g0018587 Lotus japonicus HOM05D002966 ORTHO05D003274 2.9e-22 109.0 78 69.2
VMungo1309G0555 Vigna mungo HOM05D002966 ORTHO05D003274 2.9e-22 109.0 77 70.1
Phvul.009G033300 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 5.0e-22 108.2 80 68.8
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 7.2e-21 104.4 74 66.2
Lalb_Chr19g0133331 Lupinus albus HOM05D002966 ORTHO05D003274 1.6e-20 103.2 77 64.9
SGA_v2.0_scaffold7G03599 Striga asiatica HOM05D002966 ORTHO05D003274 1.6e-20 103.2 78 64.1
MD01G1075700 Malus domestica HOM05D002966 ORTHO05D003274 2.7e-20 102.4 65 76.9
Lalb_Chr03g0031721 Lupinus albus HOM05D002966 ORTHO05D003274 3.6e-20 102.1 81 66.7
SHI21411 Sapria himalayana HOM05D002966 ORTHO05D003274 3.6e-20 102.1 77 61.0
MD12G1131000 Malus domestica HOM05D002966 ORTHO05D003274 5.1e-19 98.2 65 72.3
Lsat_1_v5_gn_4_112101 Lactuca sativa HOM05D002966 ORTHO05D003274 6.7e-19 97.8 68 76.5
HPP92_000947 Vanilla planifolia HOM05D002966 ORTHO05D003274 6.7e-19 97.8 79 65.8
SGA_v2.0_scaffold239G44041 Striga asiatica HOM05D002966 ORTHO05D003274 2.5e-18 95.9 81 60.5
Zm00001eb213650 Zea mays HOM05D002966 ORTHO05D003274 1.3e-17 93.6 80 61.2
Zm00001eb057330 Zea mays HOM05D002966 ORTHO05D003274 2.4e-16 89.4 81 56.8
Zm00001eb059720 Zea mays HOM05D002966 ORTHO05D003274 2.4e-16 89.4 81 55.6
Os03g0778400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 3.1e-16 89.0 83 56.6
Zm00001eb059740 Zea mays HOM05D002966 ORTHO05D003274 5.3e-16 88.2 81 55.6
Nitab4.5_0002633g0040 Nicotiana tabacum HOM05D002966 ORTHO05D003274 2.5e-13 79.3 64 62.5
Oeu034059.1 Olea europaea HOM05D002966 ORTHO05D003274 6.1e-12 74.7 48 81.2
Cfa015983 Carpinus fangiana HOM05D000018 ORTHO05D001920 5.7e-10 68.2 34 88.2
Peaxi162Scf00452g00614 Petunia axillaris HOM05D002966 ORTHO05D003274 5.7e-10 68.2 78 52.6
SEGI_34145 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 5.7e-10 68.2 83 45.8
SEGI_34566 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 5.0e-06 55.1 82 37.8


User provided reference genes

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