Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010870 Carpinus fangiana HOM05D000513 ORTHO05D015885 6.4e-85 317.4 162 100.0
Haze_15732 Corylus avellana HOM05D000513 ORTHO05D015885 2.9e-45 185.7 121 84.3
CiPaw.01G082200 Carya illinoinensis HOM05D000513 ORTHO05D004203 2.2e-32 142.9 122 65.6
QL08p047180 Quercus lobata HOM05D000513 ORTHO05D004203 4.1e-31 138.7 125 65.6
Prupe.2G197400 Prunus persica HOM05D000513 ORTHO05D004203 2.6e-30 136.0 125 64.0
MD07G1159300 Malus domestica HOM05D000513 ORTHO05D004203 2.2e-29 132.9 123 61.8
Nn3g18870 Nelumbo nucifera HOM05D000513 ORTHO05D004203 2.0e-25 119.8 122 54.1
Haze_09199 Corylus avellana HOM05D000513 ORTHO05D004203 1.3e-24 117.1 122 53.3
Thecc.03G217900 Theobroma cacao HOM05D000513 ORTHO05D004203 2.8e-24 115.9 120 57.5
Cfa011899 Carpinus fangiana HOM05D000513 ORTHO05D004203 4.8e-24 115.2 122 52.5
Dinv12895 Davidia involucrata HOM05D000513 ORTHO05D004203 8.2e-24 114.4 120 55.8
CSS0004941 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D004203 1.1e-23 114.0 122 54.9
TAR629G2888 Trochodendron aralioides HOM05D000513 ORTHO05D004203 1.1e-23 114.0 122 50.8
CiPaw.12G075900 Carya illinoinensis HOM05D000513 ORTHO05D004203 2.0e-22 109.8 120 53.3
RcHm_v2.0_Chr1g0361061 Rosa chinensis HOM05D000513 ORTHO05D004203 3.5e-22 109.0 122 52.5
Duzib068G0934 Durio zibethinus HOM05D000513 ORTHO05D004203 5.9e-22 108.2 122 53.3
CiPaw.11G110200 Carya illinoinensis HOM05D000513 ORTHO05D004203 7.7e-22 107.8 120 51.7
Prupe.5G132800 Prunus persica HOM05D000513 ORTHO05D004203 7.7e-22 107.8 122 52.5
Duzib084G1375 Durio zibethinus HOM05D000513 ORTHO05D004203 1.7e-21 106.7 120 52.5
FAN10G3042 Fragaria x ananassa HOM05D000513 ORTHO05D004203 1.7e-21 106.7 122 54.1
GSVIVG01027437001 Vitis vinifera HOM05D000513 ORTHO05D004203 1.7e-21 106.7 122 52.5
FAN06G1902 Fragaria x ananassa HOM05D000513 ORTHO05D004203 2.2e-21 106.3 122 54.1
FAN06G2028 Fragaria x ananassa HOM05D000513 ORTHO05D004203 2.2e-21 106.3 122 54.1
CSS0037992 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D004203 5.0e-21 105.1 127 50.4
FAN01G2384 Fragaria x ananassa HOM05D000513 ORTHO05D004203 5.0e-21 105.1 122 54.1
QL02p027352 Quercus lobata HOM05D000513 ORTHO05D004203 6.5e-21 104.8 118 55.1
FvH4_7g17630 Fragaria vesca HOM05D000513 ORTHO05D004203 8.5e-21 104.4 122 53.3
Gohir.A12G241600 Gossypium hirsutum HOM05D000513 ORTHO05D004203 8.5e-21 104.4 122 52.5
Gohir.D12G242900 Gossypium hirsutum HOM05D000513 ORTHO05D004203 8.5e-21 104.4 122 52.5
Gorai.008G260100 Gossypium raimondii HOM05D000513 ORTHO05D004203 8.5e-21 104.4 122 52.5
CANSAT56G0796 Cannabis sativa HOM05D000513 ORTHO05D004203 1.1e-20 104.0 122 53.3
Peaxi162Scf00074g00132 Petunia axillaris HOM05D000513 ORTHO05D004203 1.1e-20 104.0 120 49.2
COL.COLO4_10828 Corchorus olitorius HOM05D000513 ORTHO05D004203 1.5e-20 103.6 120 51.7
MD14G1138500 Malus domestica HOM05D000513 ORTHO05D004203 2.5e-20 102.8 81 65.4
Gohir.A09G187900 Gossypium hirsutum HOM05D000513 ORTHO05D004203 3.2e-20 102.4 120 50.0
Gohir.D09G182700 Gossypium hirsutum HOM05D000513 ORTHO05D004203 3.2e-20 102.4 120 50.0
CAN.G567.105 Capsicum annuum HOM05D000513 ORTHO05D004203 4.2e-20 102.1 120 49.2
FAN03G0047 Fragaria x ananassa HOM05D000513 ORTHO05D004203 4.2e-20 102.1 122 52.5
Gorai.006G205000 Gossypium raimondii HOM05D000513 ORTHO05D004203 4.2e-20 102.1 120 50.0
Lj3g0003963 Lotus japonicus HOM05D000513 ORTHO05D004203 4.2e-20 102.1 121 50.4
Lalb_Chr04g0254151 Lupinus albus HOM05D000513 ORTHO05D004203 4.2e-20 102.1 121 53.7
Thhalv10007089m.g Eutrema salsugineum HOM05D000513 ORTHO05D004203 7.2e-20 101.3 122 49.2
Manes.01G055700 Manihot esculenta HOM05D000513 ORTHO05D004203 7.2e-20 101.3 121 51.2
TWI60G0161 Tripterygium wilfordii HOM05D000513 ORTHO05D004203 9.4e-20 100.9 120 53.3
Lj2C152T17 Lonicera japonica HOM05D000513 ORTHO05D004203 1.2e-19 100.5 122 51.6
PGR031G3834 Punica granatum HOM05D000513 ORTHO05D004203 1.2e-19 100.5 120 52.5
TWI15G0026 Tripterygium wilfordii HOM05D000513 ORTHO05D004203 1.2e-19 100.5 120 53.3
FAN13G1409 Fragaria x ananassa HOM05D000513 ORTHO05D004203 1.6e-19 100.1 122 49.2
Aa31LG6G7500 Aethionema arabicum HOM05D000513 ORTHO05D004203 2.1e-19 99.8 120 48.3
Hma1.2p1_0198F.1_g085240 Hydrangea macrophylla HOM05D000513 ORTHO05D004203 2.1e-19 99.8 119 49.6
Ciclev10019346m.g Citrus clementina HOM05D000513 ORTHO05D004203 2.7e-19 99.4 124 53.2
FvH4_5g10580 Fragaria vesca HOM05D000513 ORTHO05D004203 3.6e-19 99.0 122 49.2
FAN04G2947 Fragaria x ananassa HOM05D000513 ORTHO05D004203 3.6e-19 99.0 122 48.4
FAN18G2282 Fragaria x ananassa HOM05D000513 ORTHO05D004203 3.6e-19 99.0 122 49.2
MD06G1122100 Malus domestica HOM05D000513 ORTHO05D004203 3.6e-19 99.0 81 64.2
Nitab4.5_0003419g0070 Nicotiana tabacum HOM05D000513 ORTHO05D004203 3.6e-19 99.0 120 47.5
Sp1g28110 Schrenkiella parvula HOM05D000513 ORTHO05D004203 3.6e-19 99.0 121 47.9
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.6e-19 99.0 113 51.3
FAN08G2829 Fragaria x ananassa HOM05D000513 ORTHO05D004203 4.7e-19 98.6 122 48.4
MBI12_g20131_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D004203 8.0e-19 97.8 126 48.4
CANSAT21G0008 Cannabis sativa HOM05D000513 ORTHO05D004203 1.0e-18 97.4 121 48.8
Eucgr.E01068 Eucalyptus grandis HOM05D000513 ORTHO05D004203 1.0e-18 97.4 120 50.0
Nitab4.5_0002520g0080 Nicotiana tabacum HOM05D000513 ORTHO05D004203 1.0e-18 97.4 120 46.7
Oeu015751.1 Olea europaea HOM05D000513 ORTHO05D004203 1.0e-18 97.4 120 47.5
PGR042G1812 Punica granatum HOM05D000513 ORTHO05D004203 1.0e-18 97.4 124 51.6
Oeu042856.2 Olea europaea HOM05D000513 ORTHO05D004203 1.8e-18 96.7 122 48.4
VMungo0331G1196 Vigna mungo HOM05D000513 ORTHO05D004203 1.8e-18 96.7 121 51.2
arahy.Tifrunner.gnm1.ann1.VC882V Arachis hypogaea HOM05D000513 ORTHO05D004203 5.2e-18 95.1 123 48.8
Ca_26064_v3 Cicer arietinum L. HOM05D000513 ORTHO05D004203 5.2e-18 95.1 123 49.6
arahy.Tifrunner.gnm1.ann1.PH1SAB Arachis hypogaea HOM05D000513 ORTHO05D004203 6.8e-18 94.7 123 48.8
Gohir.A08G109200 Gossypium hirsutum HOM05D000513 ORTHO05D004203 6.8e-18 94.7 120 48.3
Lalb_Chr17g0343041 Lupinus albus HOM05D000513 ORTHO05D004203 6.8e-18 94.7 123 50.4
Sc01g0010840 Simmondsia chinensis HOM05D000513 ORTHO05D004203 6.8e-18 94.7 120 47.5
Duzib138G1238 Durio zibethinus HOM05D000513 ORTHO05D004203 8.8e-18 94.4 117 49.6
Manes.02G001000 Manihot esculenta HOM05D000513 ORTHO05D004203 8.8e-18 94.4 118 44.9
PSO782G4812 Papaver somniferum HOM05D000513 ORTHO05D004203 8.8e-18 94.4 120 46.7
Phvul.010G119300 Phaseolus vulgaris HOM05D000513 ORTHO05D004203 8.8e-18 94.4 121 49.6
Psat0s3561g0040 Pisum sativum HOM05D000513 ORTHO05D004203 8.8e-18 94.4 123 51.2
Gorai.004G128700 Gossypium raimondii HOM05D000513 ORTHO05D004203 1.2e-17 94.0 120 47.5
Cpa.g.sc37.97 Carica papaya HOM05D000513 ORTHO05D004203 2.0e-17 93.2 122 50.8
Atru.chr5.765 Acer truncatum HOM05D000513 ORTHO05D004203 3.4e-17 92.4 129 48.8
Gohir.D08G121966 Gossypium hirsutum HOM05D000513 ORTHO05D015885 3.4e-17 92.4 120 47.5
Medtr8g024340 Medicago truncatula HOM05D000513 ORTHO05D004203 3.4e-17 92.4 125 47.2
BcaC05g27819 Brassica carinata HOM05D000513 ORTHO05D004203 4.4e-17 92.0 120 44.2
C05p38190 Brassica napus HOM05D000513 ORTHO05D004203 4.4e-17 92.0 120 44.2
BolC5t32547H Brassica oleracea HOM05D000513 ORTHO05D004203 4.4e-17 92.0 120 44.2
Solyc08g083320.4 Solanum lycopersicum HOM05D000513 ORTHO05D004203 4.4e-17 92.0 118 44.9
ClCG01G001420 Citrullus lanatus HOM05D000513 ORTHO05D004203 5.7e-17 91.7 120 47.5
RcHm_v2.0_Chr7g0187571 Rosa chinensis HOM05D000513 ORTHO05D004203 5.7e-17 91.7 122 45.9
Sopen08g031530 Solanum pennellii HOM05D000513 ORTHO05D004203 5.7e-17 91.7 118 44.9
TPR.G19833 Trifolium pratense HOM05D000513 ORTHO05D004203 5.7e-17 91.7 124 49.2
PGSC0003DMG400012111 Solanum tuberosum HOM05D000513 ORTHO05D004203 1.3e-16 90.5 118 44.1
THA.LOC104806459 Tarenaya hassleriana HOM05D000513 ORTHO05D004203 1.7e-16 90.1 120 48.3
Potri.011G152200 Populus trichocarpa HOM05D000513 ORTHO05D004203 2.8e-16 89.4 120 45.8
Rhsim03G0214900 Rhododendron simsii HOM05D000513 ORTHO05D004203 3.7e-16 89.0 124 48.4
A05p24500 Brassica napus HOM05D000513 ORTHO05D004203 4.8e-16 88.6 120 43.3
BraA05t21339Z Brassica rapa HOM05D000513 ORTHO05D004203 4.8e-16 88.6 120 43.3
vmacro06437 Vaccinium macrocarpon HOM05D000513 ORTHO05D004203 6.3e-16 88.2 124 46.8
Glyma.07G049900 Glycine max HOM05D000513 ORTHO05D004203 1.1e-15 87.4 122 50.0
Nn1g00434 Nelumbo nucifera HOM05D000513 ORTHO05D004203 1.1e-15 87.4 124 45.2
GSVIVG01019680001 Vitis vinifera HOM05D000513 ORTHO05D004203 1.1e-15 87.4 123 52.0
AT1G32900 Arabidopsis thaliana HOM05D000513 ORTHO05D004203 1.4e-15 87.0 119 44.5
Sc13g0010240 Simmondsia chinensis HOM05D000513 ORTHO05D004203 1.8e-15 86.7 121 45.5
FAN10G1266 Fragaria x ananassa HOM05D000513 ORTHO05D004203 2.4e-15 86.3 86 55.8
Ciclev10019349m.g Citrus clementina HOM05D000513 ORTHO05D004203 3.1e-15 85.9 118 45.8
CsaV3_5G001560 Cucumis sativus L. HOM05D000513 ORTHO05D004203 3.1e-15 85.9 118 43.2
Lalb_Chr06g0168591 Lupinus albus HOM05D000513 ORTHO05D004203 4.1e-15 85.5 123 48.0
vmacro06435 Vaccinium macrocarpon HOM05D000513 ORTHO05D004203 4.1e-15 85.5 124 46.0
BcaB03g13709 Brassica carinata HOM05D000513 ORTHO05D004203 5.4e-15 85.1 120 44.2
Potri.001G449500 Populus trichocarpa HOM05D000513 ORTHO05D004203 7.0e-15 84.7 120 45.0
Sed0017553 Sechium edule HOM05D000513 ORTHO05D004203 7.0e-15 84.7 120 44.2
MELO3C005795.2 Cucumis melo HOM05D000513 ORTHO05D004203 9.1e-15 84.3 120 44.2
Lj5g0001445 Lotus japonicus HOM05D000513 ORTHO05D004203 9.1e-15 84.3 120 46.7
CSS0036234 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D015885 2.0e-14 83.2 65 63.1
CSS0048537 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D015885 2.0e-14 83.2 65 63.1
Glyma.16G018500 Glycine max HOM05D000513 ORTHO05D004203 2.0e-14 83.2 122 48.4
Sabra16G0303300 Salix brachista HOM05D000513 ORTHO05D004203 2.0e-14 83.2 124 47.6
Migut.H02246 Erythranthe guttata HOM05D000513 ORTHO05D004203 2.7e-14 82.8 125 44.8
Lalb_Chr02g0149541 Lupinus albus HOM05D000513 ORTHO05D004203 3.5e-14 82.4 120 44.2
Hund24807 Selenicereus undatus HOM05D000513 ORTHO05D004203 4.5e-14 82.0 122 46.7
SGA_v2.0_scaffold104G30254 Striga asiatica HOM05D000513 ORTHO05D004203 5.9e-14 81.6 122 41.0
CARHR032230 Cardamine hirsuta HOM05D000513 ORTHO05D004203 7.7e-14 81.3 123 43.1
Rhsim02G0253600 Rhododendron simsii HOM05D000513 ORTHO05D004203 7.7e-14 81.3 120 47.5
MSTRG.24867 Avicennia marina HOM05D000513 ORTHO05D004203 1.0e-13 80.9 119 45.4
MD00G1176700 Malus domestica HOM05D000062 ORTHO05D000043 1.0e-13 80.9 44 81.8
Atru.chr9.1862 Acer truncatum HOM05D000513 ORTHO05D004203 1.3e-13 80.5 120 46.7
Dinv29216 Davidia involucrata HOM05D000513 ORTHO05D004203 1.3e-13 80.5 52 73.1
ECA236G0550 Erigeron canadensis HOM05D000513 ORTHO05D004203 1.3e-13 80.5 82 53.7
ATR0304G017 Amborella trichopoda HOM05D000513 ORTHO05D004203 1.7e-13 80.1 127 37.8
AL1G47180 Arabidopsis lyrata HOM05D000513 ORTHO05D004203 2.2e-13 79.7 119 42.0
Carub.0001s3120 Capsella rubella HOM05D000513 ORTHO05D004203 2.2e-13 79.7 121 48.8
Aqoxy1G01622 Aquilegia oxysepala HOM05D000513 ORTHO05D015885 5.0e-13 78.6 122 41.0
Aqoxy5G04134 Aquilegia oxysepala HOM05D000513 ORTHO05D004203 5.0e-13 78.6 122 41.0
Sabra11G0136800 Salix brachista HOM05D000513 ORTHO05D004203 5.0e-13 78.6 120 43.3
Sabra11G0148500 Salix brachista HOM05D000513 ORTHO05D004203 5.0e-13 78.6 120 43.3
DCAR_008624 Daucus carota HOM05D000513 ORTHO05D004203 6.5e-13 78.2 118 42.4
Medtr1g078000 Medicago truncatula HOM05D000513 ORTHO05D004203 6.5e-13 78.2 82 54.9
Glyma.10G172200 Glycine max HOM05D000513 ORTHO05D004203 1.1e-12 77.4 118 42.4
Lsat_1_v5_gn_2_73301 Lactuca sativa HOM05D000513 ORTHO05D004203 1.5e-12 77.0 82 50.0
CDE04G2299 Ceratophyllum demersum HOM05D000513 ORTHO05D004203 3.2e-12 75.9 122 41.0
HanXRQChr04g0119781 Helianthus annuus HOM05D000513 ORTHO05D004203 4.2e-12 75.5 46 73.9
Ca_09940_v3 Cicer arietinum L. HOM05D000513 ORTHO05D004203 9.5e-12 74.3 122 44.3
Ca_09956_v3 Cicer arietinum L. HOM05D000513 ORTHO05D004203 9.5e-12 74.3 122 44.3
AUR62007078 Chenopodium quinoa HOM05D000513 ORTHO05D004203 2.1e-11 73.2 120 41.7
Sed0000131 Sechium edule HOM05D000513 ORTHO05D004203 2.1e-11 73.2 120 44.2
SEGI_13884 Sequoiadendron giganteum HOM05D000513 ORTHO05D004203 2.1e-11 73.2 132 37.9
Psat0s4284g0040 Pisum sativum HOM05D000513 ORTHO05D004203 2.7e-11 72.8 121 43.8
VMungo0720G2216 Vigna mungo HOM05D000513 ORTHO05D004203 3.6e-11 72.4 118 43.2
arahy.Tifrunner.gnm1.ann1.VAT0VP Arachis hypogaea HOM05D000513 ORTHO05D004203 4.7e-11 72.0 124 37.9
AUR62006009 Chenopodium quinoa HOM05D000513 ORTHO05D004203 6.1e-11 71.6 126 41.3
Glyma.20G218100 Glycine max HOM05D000513 ORTHO05D004203 6.1e-11 71.6 78 52.6
Zm00001eb378140 Zea mays HOM05D000513 ORTHO05D004203 8.0e-11 71.2 121 38.8
SalBow6G1468 Salvia bowleyana HOM05D000513 ORTHO05D004203 1.8e-10 70.1 79 48.1
AUR62019941 Chenopodium quinoa HOM05D000513 ORTHO05D004203 2.3e-10 69.7 120 40.8
MBI04_g22062_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D004203 2.3e-10 69.7 99 46.5
Cc08_g16970 Coffea canephora HOM05D000513 ORTHO05D004203 3.0e-10 69.3 121 39.7
Hund21054 Selenicereus undatus HOM05D000513 ORTHO05D004203 3.0e-10 69.3 108 40.7
Ah.07g204760 Amaranthus hybridus HOM05D000513 ORTHO05D004203 4.0e-10 68.9 122 40.2
Ah.12g053350 Amaranthus hybridus HOM05D000513 ORTHO05D004203 5.2e-10 68.6 119 37.8
EL10Ac3g05186 Beta vulgaris HOM05D000513 ORTHO05D004203 5.2e-10 68.6 123 39.8
AUR62035617 Chenopodium quinoa HOM05D000513 ORTHO05D004203 5.2e-10 68.6 126 39.7
Pp3c18_20850 Physcomitrium patens HOM05D000513 ORTHO05D004203 6.8e-10 68.2 123 35.8
SMO143G0142 Selaginella moellendorffii HOM05D000513 ORTHO05D004203 1.2e-09 67.4 42 76.2
TPR.G21618 Trifolium pratense HOM05D000513 ORTHO05D004203 1.2e-09 67.4 84 47.6
CDE12G0585 Ceratophyllum demersum HOM05D000513 ORTHO05D004203 5.7e-09 65.1 42 76.2
CBR_g50265 Chara braunii HOM05D000513 ORTHO05D004203 5.7e-09 65.1 45 64.4
EL10Ac5g12400 Beta vulgaris HOM05D000513 ORTHO05D004203 7.5e-09 64.7 119 38.7
Zm00001eb305810 Zea mays HOM05D000513 ORTHO05D004203 7.5e-09 64.7 78 51.3
Os06g0133000 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D004203 9.8e-09 64.3 123 34.1
Ah.04g154810 Amaranthus hybridus HOM05D000513 ORTHO05D004203 1.3e-08 63.9 118 36.4
Os07g0412100 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D004203 1.3e-08 63.9 77 49.4
HPP92_014632 Vanilla planifolia HOM05D000513 ORTHO05D004203 1.3e-08 63.9 125 36.8
CBR_g54339 Chara braunii HOM05D000513 ORTHO05D004203 1.7e-08 63.5 40 67.5
CBR_g84048 Chara braunii HOM05D000513 ORTHO05D004203 1.7e-08 63.5 40 67.5
Mapoly0065s0013 Marchantia polymorpha HOM05D000513 ORTHO05D004203 1.7e-08 63.5 38 71.1
MD00G1136700 Malus domestica HOM05D000513 ORTHO05D246186 3.7e-08 62.4 33 84.8
CBR_g50668 Chara braunii HOM05D000513 ORTHO05D004203 8.3e-08 61.2 40 67.5
CBR_g50672 Chara braunii HOM05D000513 ORTHO05D004203 8.3e-08 61.2 40 67.5
CBR_g50673 Chara braunii HOM05D000513 ORTHO05D004203 8.3e-08 61.2 40 67.5
CBR_g50677 Chara braunii HOM05D000513 ORTHO05D004203 8.3e-08 61.2 40 67.5
vmacro11489 Vaccinium macrocarpon HOM05D000513 ORTHO05D004203 8.3e-08 61.2 31 87.1
Pp3c21_3210 Physcomitrium patens HOM05D000513 ORTHO05D004203 1.1e-07 60.8 33 81.8
Hma1.2p1_0910F.1_g235830 Hydrangea macrophylla HOM05D000513 ORTHO05D015885 1.4e-07 60.5 59 54.2
CBR_g75690 Chara braunii HOM05D000513 ORTHO05D004203 9.2e-07 57.8 62 51.6
CBR_g51673 Chara braunii HOM05D000513 ORTHO05D015885 1.2e-06 57.4 44 59.1
PRCOL_00006347 Prasinoderma coloniale HOM05D000513 ORTHO05D004203 2.0e-06 56.6 31 80.6


User provided reference genes

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