Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 9.0e-96 353.6 181 100.0
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 2.5e-90 335.5 180 94.4
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.1e-84 315.8 170 95.3
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 3.7e-81 305.1 180 85.0
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 4.1e-80 301.6 180 83.9
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 7.2e-77 290.8 180 81.7
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 1.2e-76 290.0 180 80.0
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 2.1e-76 289.3 180 80.0
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 6.1e-76 287.7 180 78.9
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 3.0e-75 285.4 180 77.2
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 5.1e-75 284.6 178 78.7
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 6.7e-75 284.3 180 77.8
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.1e-74 283.5 175 80.0
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 2.0e-74 282.7 180 78.9
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 3.3e-74 282.0 181 77.9
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 5.7e-74 281.2 180 73.9
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 5.7e-74 281.2 180 77.8
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 7.4e-74 280.8 180 77.2
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 7.4e-74 280.8 175 80.0
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 2.8e-73 278.9 174 77.6
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 2.8e-73 278.9 174 77.6
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 4.8e-73 278.1 180 77.2
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 6.3e-73 277.7 180 72.8
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.1e-72 276.9 171 80.1
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.4e-72 276.6 175 77.7
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.4e-72 276.6 180 76.1
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.8e-72 276.2 180 74.4
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.8e-72 276.2 174 76.4
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 3.1e-72 275.4 180 74.4
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.1e-72 275.4 180 72.2
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.1e-72 275.0 180 75.6
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 5.3e-72 274.6 176 77.3
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 2.0e-71 272.7 183 74.9
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 2.6e-71 272.3 180 71.7
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 3.5e-71 271.9 180 71.7
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 7.7e-71 270.8 184 74.5
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.0e-70 270.4 181 72.9
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.2e-70 269.2 180 76.1
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 5.0e-70 268.1 180 74.4
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.4e-69 266.5 180 76.1
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 1.4e-69 266.5 180 71.7
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 2.5e-69 265.8 181 72.4
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 5.5e-69 264.6 180 70.0
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 1.2e-68 263.5 180 72.2
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.1e-68 262.7 180 69.4
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.6e-68 261.9 180 72.8
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 6.1e-68 261.2 173 74.0
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.4e-67 260.0 182 73.1
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 1.8e-67 259.6 180 70.6
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 3.0e-67 258.8 180 69.4
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 5.2e-67 258.1 180 68.9
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 8.8e-67 257.3 180 67.2
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.6e-66 255.8 197 67.5
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 7.4e-66 254.2 179 71.5
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 6.3e-65 251.1 196 65.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 3.1e-64 248.8 191 64.9
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.6e-63 245.7 180 65.6
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 5.9e-63 244.6 170 72.4
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 7.7e-63 244.2 180 64.4
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.3e-62 243.4 211 57.8
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.3e-62 243.4 180 65.0
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.7e-62 243.0 180 64.4
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.9e-62 242.3 177 66.1
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 5.0e-62 241.5 180 65.0
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 5.0e-62 241.5 170 67.6
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.5e-61 240.0 173 69.4
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 4.7e-60 235.0 174 66.7
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 6.1e-60 234.6 174 64.4
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.0e-59 233.8 177 66.1
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.8e-59 233.0 170 67.6
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.3e-59 232.6 167 67.1
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 5.7e-58 228.0 146 78.1
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 7.5e-58 227.6 143 76.2
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 8.3e-57 224.2 169 65.1
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 2.4e-56 222.6 178 60.7
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 7.0e-56 221.1 180 60.6
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 1.3e-54 216.9 180 63.9
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 2.9e-54 215.7 182 61.5
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 6.5e-54 214.5 180 62.2
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 7.5e-50 201.1 170 58.2
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 6.3e-49 198.0 131 77.1
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 9.1e-48 194.1 135 70.4
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.2e-47 193.7 181 56.4
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.3e-46 189.5 137 71.5
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 2.3e-46 189.5 135 65.9
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 5.5e-45 184.9 174 54.6
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 7.2e-45 184.5 164 62.8
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 3.0e-43 179.1 146 66.4
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 5.9e-39 164.9 104 78.8
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 5.9e-39 164.9 104 78.8
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 1.7e-38 163.3 126 69.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.1e-36 156.4 165 49.1
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 1.2e-34 150.6 180 47.2
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.5e-34 150.2 158 48.1
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 5.4e-32 141.7 152 52.0
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 7.0e-32 141.4 136 55.1
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 6.0e-31 138.3 170 39.4
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.0e-30 137.5 164 40.9
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.3e-29 132.5 180 44.4
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 2.0e-26 123.2 107 53.3
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.4e-24 117.1 109 59.6
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 4.6e-23 112.1 84 65.5
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.6e-20 103.6 76 71.1
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 1.4e-19 100.5 89 57.3
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 4.4e-18 95.5 74 63.5
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 2.7e-15 86.3 149 34.9
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 7.8e-15 84.7 62 67.7
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 8.6e-14 81.3 42 78.6
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.5e-13 80.5 68 58.8
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 1.1e-11 74.3 44 77.3
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 5.2e-11 72.0 136 36.8
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 4.2e-08 62.4 82 51.2
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 1.2e-07 60.8 35 68.6
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 3.5e-07 59.3 183 26.8
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.0e-06 57.8 173 26.0
SGA_v2.0_scaffold62G21353 Striga asiatica HOM05D058974 ORTHO05D402092 1.3e-06 57.4 34 79.4


User provided reference genes

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