Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 6.2e-123 444.1 220 100.0
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.7e-101 372.9 195 95.9
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 1.2e-94 350.1 195 88.7
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 2.1e-91 339.3 194 85.6
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 5.3e-90 334.7 194 85.6
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.2e-88 329.3 192 82.3
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 2.2e-88 329.3 193 83.9
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 9.3e-87 323.9 192 82.8
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 1.6e-86 323.2 195 82.1
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 2.1e-86 322.8 209 78.0
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 6.0e-86 321.2 193 81.3
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.0e-85 320.5 194 81.4
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.8e-85 319.7 195 80.5
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 2.3e-85 319.3 191 81.2
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 8.7e-85 317.4 191 81.2
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.5e-84 316.6 194 79.9
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.9e-84 316.2 170 95.3
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 3.3e-84 315.5 196 80.1
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 3.3e-84 315.5 193 79.8
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 3.3e-84 315.5 193 79.8
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 5.6e-84 314.7 193 80.8
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 7.4e-84 314.3 191 80.1
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 7.4e-84 314.3 193 79.3
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 9.6e-84 313.9 194 79.9
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 2.8e-83 312.4 193 78.8
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 4.8e-83 311.6 194 79.4
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 4.8e-83 311.6 193 79.3
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 1.1e-82 310.5 194 79.4
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 6.9e-82 307.8 191 75.9
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 2.6e-81 305.8 184 82.1
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 2.6e-81 305.8 191 77.0
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 4.5e-81 305.1 194 78.4
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.3e-80 303.5 193 76.7
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.7e-80 303.1 195 77.9
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 2.9e-80 302.4 191 75.4
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 6.5e-80 301.2 191 74.9
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 8.4e-80 300.8 191 76.4
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.4e-80 300.8 194 77.3
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 8.4e-80 300.8 190 76.3
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 8.4e-80 300.8 191 74.9
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.9e-79 299.7 190 78.4
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 1.9e-79 299.7 191 74.3
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.2e-79 298.9 192 75.5
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 4.2e-79 298.5 194 75.8
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 5.5e-79 298.1 211 72.5
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 9.3e-79 297.4 193 75.6
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.1e-78 296.2 200 70.0
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 3.5e-78 295.4 219 68.9
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 4.6e-78 295.0 191 73.8
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 1.0e-77 293.9 191 73.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 3.9e-77 292.0 213 68.1
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 6.7e-77 291.2 192 75.5
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.1e-76 290.4 192 74.0
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.9e-76 289.7 198 69.2
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 4.3e-76 288.5 199 68.8
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 9.6e-76 287.3 191 72.8
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 2.1e-75 286.2 199 68.3
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.1e-75 286.2 194 70.1
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 3.7e-75 285.4 201 66.7
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 3.7e-75 285.4 199 70.4
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 4.8e-75 285.0 191 69.6
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.4e-74 283.5 198 69.7
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.4e-74 282.7 193 71.0
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 9.0e-74 280.8 191 72.8
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.6e-73 279.3 193 67.9
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.0e-72 277.3 164 82.3
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 8.5e-72 274.2 191 68.1
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 7.2e-71 271.2 222 60.4
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.2e-70 270.4 206 63.6
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 6.1e-70 268.1 188 68.6
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 1.3e-69 266.9 191 69.1
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 2.3e-69 266.2 166 77.7
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 6.7e-69 264.6 190 67.4
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.9e-68 263.1 201 65.7
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 5.7e-68 261.5 191 66.0
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.8e-67 259.2 192 69.8
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 4.8e-67 258.5 192 68.8
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 8.2e-67 257.7 193 67.9
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 4.1e-66 255.4 200 61.5
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.4e-63 246.9 157 75.2
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 9.7e-60 234.2 158 70.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 4.1e-58 228.8 192 61.5
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 2.6e-57 226.1 144 77.1
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 7.7e-57 224.6 196 56.6
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 4.7e-54 215.3 128 82.8
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 4.7e-54 215.3 128 82.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 2.5e-47 193.0 121 79.3
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 4.7e-46 188.7 168 63.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 3.0e-45 186.0 182 51.6
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.0e-45 185.7 126 74.6
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 3.3e-44 182.6 194 53.1
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 2.0e-41 173.3 129 69.8
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.0e-40 171.0 135 66.7
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.3e-40 170.6 169 54.4
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.9e-39 166.8 194 46.4
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 5.5e-39 165.2 187 42.8
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 1.4e-37 160.6 130 59.2
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 8.8e-37 157.9 186 41.9
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 3.8e-32 142.5 127 55.1
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.1e-26 124.4 67 85.1
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.4e-26 123.2 169 44.4
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 4.1e-26 122.5 92 67.4
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.3e-23 112.8 104 59.6
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 6.1e-22 108.6 157 43.9
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 6.1e-22 108.6 75 68.0
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 5.2e-21 105.5 64 78.1
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 5.2e-21 105.5 89 59.6
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 1.3e-19 100.9 73 65.8
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 2.2e-19 100.1 111 57.7
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 2.3e-16 90.1 187 33.7
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 6.6e-16 88.6 64 65.6
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 3.3e-15 86.3 160 36.2
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 3.7e-11 72.8 44 75.0
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 7.0e-10 68.6 40 70.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 8.6e-08 61.6 165 27.9
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.5e-07 60.1 174 26.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.6e-06 56.2 174 21.8
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 8.1e-06 55.1 85 42.4


User provided reference genes

Program Settings